RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 LINC00479Q96M42 142 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 NAA50Q9GZZ1 169 aaKnown RBP3.64□□□□□ -1.83
VPS53-208ENST00000570650 TREM1Q9NP99 234 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 GSKIPQ9P0R6 139 aa3.64□□□□□ -1.83
VPS53-208ENST00000570650 IGKV2D-30A0A075B6S6 120 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.63□□□□□ -1.83
VPS53-208ENST00000570650 OR7C2O60412 319 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 ANGP03950 147 aaKnown RBP3.63□□□□□ -1.83
VPS53-208ENST00000570650 RNASE3P12724 160 aaKnown RBP3.63□□□□□ -1.83
VPS53-208ENST00000570650 S100A11P31949 105 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 LGALSLQ3ZCW2 172 aaPredicted RBP3.63□□□□□ -1.83
VPS53-208ENST00000570650 TOMM5Q8N4H5 51 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 OR10G7Q8NGN6 311 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 OR2G3Q8NGZ4 309 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 TVP23CQ96ET8 276 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 HYLS1Q96M11 299 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 VAX2Q9UIW0 290 aa3.63□□□□□ -1.83
VPS53-208ENST00000570650 hDV102S1A0JD36 115 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 FAM24AA6NFZ4 105 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 ATP6V1G2O95670 118 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 TCRBP04435 133 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 MPV17L2Q567V2 206 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 SPANXN2Q5MJ10 180 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 UFSP1Q6NVU6 142 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 KRTAP26-1Q6PEX3 210 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 CMTM2Q8TAZ6 248 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 DEDD2Q8WXF8 326 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 TRIM63Q969Q1 353 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 NDFIP1Q9BT67 221 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 NPCDR1Q9BY65 106 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 NMES1Q9C002 83 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 SLIRPQ9GZT3 109 aaKnown RBP3.62□□□□□ -1.83
VPS53-208ENST00000570650 OTORQ9NRC9 128 aa3.62□□□□□ -1.83
VPS53-208ENST00000570650 LYRM2Q9NU23 88 aaPredicted RBP3.62□□□□□ -1.83
VPS53-208ENST00000570650 LSM5Q9Y4Y9 91 aaKnown RBP3.62□□□□□ -1.83
VPS53-208ENST00000570650 TRBV6-8A0A0A6YYG3 113 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 FAM231BA6NCW3 169 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 H7C1H1 209 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 SULT1A1P50225 295 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 ZNF80P51504 273 aaPredicted RBP3.61□□□□□ -1.83
VPS53-208ENST00000570650 S100A10P60903 97 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 PKIAP61925 76 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 UBE2L3P68036 154 aaKnown RBP3.61□□□□□ -1.83
VPS53-208ENST00000570650 HBG1P69891 147 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 HBG2P69892 147 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 RPL36AP83881 106 aaKnown RBP3.61□□□□□ -1.83
VPS53-208ENST00000570650 SRSF9Q13242 221 aaKnown RBP eCLIP3.61□□□□□ -1.83
VPS53-208ENST00000570650 ATP6V1FQ16864 119 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 FAM74A1Q5RGS3 127 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 GOLT1AQ6ZVE7 132 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 STX12Q86Y82 276 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 TMEM252Q8N6L7 170 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 ARL6IP6Q8N6S5 226 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 TMEM75Q8N9X5 138 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 BCL7BQ9BQE9 202 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 RBM38Q9H0Z9 239 aaKnown RBP3.61□□□□□ -1.83
VPS53-208ENST00000570650 C11orf1Q9H5F2 150 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 JPT2Q9H910 190 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 PRR34Q9NV39 138 aa3.61□□□□□ -1.83
VPS53-208ENST00000570650 FAT4Q6V0I7 4981 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 TRBV7-3A0A075B6L6 115 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 TRBV10-1A0A0K0K1A3 114 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 IGSF23A1L1A6 192 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 GCGP01275 180 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 PVALBP20472 110 aaPredicted RBP3.6□□□□□ -1.83
VPS53-208ENST00000570650 S100A4P26447 101 aaKnown RBP3.6□□□□□ -1.83
VPS53-208ENST00000570650 UBE2D3P61077 147 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 UBE2D2P62837 147 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 SPCS2Q15005 226 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 MAJINQ3KP22 176 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 PYDC2Q56P42 97 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 FAM74A4Q5TZK3 123 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 CLPSL2Q6UWE3 100 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 LYPD6BQ8NI32 183 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 KCNIP2Q9NS61 270 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 OR5AC2Q9NZP5 309 aa3.6□□□□□ -1.83
VPS53-208ENST00000570650 TRAV26-2A0A0B4J265 109 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 IGKV2-24A0A0C4DH68 120 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 MUC21A0A0G2JKD1 596 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 CCSO14618 274 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 NDUFS6O75380 124 aaKnown RBP3.59□□□□□ -1.83
VPS53-208ENST00000570650 NDUFB6O95139 128 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 PTTG1O95997 202 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 TAS2R45P59539 299 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 COX6A2Q02221 97 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 KHDC3LQ587J8 217 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 Q6ZRP5 223 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 LINC00269Q8N2A0 174 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 ZNF664Q8N3J9 261 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 STPG4Q8N801 248 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 THAP6Q8TBB0 222 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 MITD1Q8WV92 249 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 URB1-AS1Q96HZ7 61 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 SGK494Q96LW2 274 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 CHCHD5Q9BSY4 110 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 MRPS26Q9BYN8 205 aaKnown RBP3.59□□□□□ -1.83
VPS53-208ENST00000570650 PSORS1C2Q9UIG4 136 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 FLVCR2Q9UPI3 526 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 MUC2Q02817 5179 aa3.59□□□□□ -1.83
VPS53-208ENST00000570650 IGLV10-54A0A075B6I4 117 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms