RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RPH3ALQ9UNE2 315 aa7.3□□□□□ -1.24
VPS53-207ENST00000570510 TRAV8-3A0A0A6YYJ7 113 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 TRAV4A0A0B4J268 109 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 IGHV3-16A0A0C4DH30 117 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 GCGP01275 180 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 LTAP01374 205 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 CXCL1P09341 107 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 FGF8P55075 233 aaPredicted RBP7.29□□□□□ -1.24
VPS53-207ENST00000570510 WFDC2Q14508 124 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 LAGE3Q14657 143 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 CST9LP1Q5W188 147 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 TMEM183AQ8IXX5 376 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 Q8N976 141 aa7.29□□□□□ -1.24
VPS53-207ENST00000570510 DNAH8Q96JB1 4490 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 EIF3GO75821 320 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-207ENST00000570510 IFNA1P01562 189 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 FAM162BQ5T6X4 162 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 PRNTQ86SH4 94 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 Q86TA4 180 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 BAALCQ8WXS3 180 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 COX11Q9Y6N1 276 aa7.28□□□□□ -1.24
VPS53-207ENST00000570510 PDE6DO43924 150 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 PAGE4O60829 102 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 TYMSP04818 313 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 MT1HL1P0DM35 61 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 AKR1C3P42330 323 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 TIRAPP58753 221 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 UBE2G2P60604 165 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 ZNF674Q2M3X9 581 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 TOR2AQ5JU69 321 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 MUC21Q5SSG8 566 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 C9orf62Q8N4C0 152 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 OR4C5Q8NGB2 326 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 ATP6V0E2Q8NHE4 81 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 C11orf52Q96A22 123 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 DAZAP1Q96EP5 407 aaKnown RBP7.27□□□□□ -1.25
VPS53-207ENST00000570510 C9orf85Q96MD7 179 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 BIN3Q9NQY0 253 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 IL36BQ9NZH7 164 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 LRP2P98164 4655 aa7.27□□□□□ -1.25
VPS53-207ENST00000570510 LOC100131303A0A0U1RQF7 123 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 HNRNPA3P51991 378 aaKnown RBP7.26□□□□□ -1.25
VPS53-207ENST00000570510 BLOC1S1P78537 153 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 ZFP2Q6ZN57 461 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 Q6ZRU5 148 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 RMI2Q96E14 147 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 MLST8Q9BVC4 326 aa7.26□□□□□ -1.25
VPS53-207ENST00000570510 A8MWV9 139 aa7.25□□□□□ -1.25
VPS53-207ENST00000570510 GNRH2O43555 120 aa7.25□□□□□ -1.25
VPS53-207ENST00000570510 ZNF80P51504 273 aaPredicted RBP7.25□□□□□ -1.25
VPS53-207ENST00000570510 LYPD6BQ8NI32 183 aa7.25□□□□□ -1.25
VPS53-207ENST00000570510 LINC00479Q96M42 142 aa7.25□□□□□ -1.25
VPS53-207ENST00000570510 NAGKQ9UJ70 344 aa7.25□□□□□ -1.25
VPS53-207ENST00000570510 TRAV34A0A0B4J273 112 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 TRBV6-4A0A1B0GX49 114 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 GAS8-AS1O95177 125 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 S100A4P26447 101 aaKnown RBP7.24□□□□□ -1.25
VPS53-207ENST00000570510 MEF2BQ02080 365 aaPredicted RBP7.24□□□□□ -1.25
VPS53-207ENST00000570510 ZNF876PQ49A33 203 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 LELP1Q5T871 98 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 Q6ZQT7 251 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 BAGE2Q86Y30 109 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 PRADC1Q9BSG0 188 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 VAX2Q9UIW0 290 aa7.24□□□□□ -1.25
VPS53-207ENST00000570510 IGKV3D-20A0A0C4DH25 116 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 B4DEV8 164 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 KRBOX1C9JBD0 128 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 RHODO00212 210 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 BCL2P10415 239 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 MGST1P10620 155 aaKnown RBP7.23□□□□□ -1.25
VPS53-207ENST00000570510 RNASE3P12724 160 aaKnown RBP7.23□□□□□ -1.25
VPS53-207ENST00000570510 CCL20P78556 96 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 ZC2HC1AQ96GY0 325 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 SGK494Q96LW2 274 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 GNG13Q9P2W3 67 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 C11orf21Q9P2W6 132 aa7.23□□□□□ -1.25
VPS53-207ENST00000570510 IGKV2D-24A0A075B6R9 120 aa7.22□□□□□ -1.25
VPS53-207ENST00000570510 TMEM250H0YL14 139 aa7.22□□□□□ -1.25
VPS53-207ENST00000570510 GATA1P15976 413 aaPredicted RBP7.22□□□□□ -1.25
VPS53-207ENST00000570510 CRIP1P50238 77 aa7.22□□□□□ -1.25
VPS53-207ENST00000570510 URGCP-MRPS24S4R325 110 aa7.22□□□□□ -1.25
VPS53-207ENST00000570510 SCO2A0A1W2PP80 73 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 XKRY2A2RUG3 117 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 A6NJY4 79 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 SH2D1AO60880 128 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 RPL35P42766 123 aaKnown RBP7.21□□□□□ -1.26
VPS53-207ENST00000570510 RPS20P60866 119 aaKnown RBP7.21□□□□□ -1.26
VPS53-207ENST00000570510 RHOHQ15669 191 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 CFAP126Q5VTH2 177 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 SSBP4Q9BWG4 385 aaPredicted RBP7.21□□□□□ -1.26
VPS53-207ENST00000570510 GTSF1LQ9H1H1 148 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 PKHD1L1Q86WI1 4243 aa7.21□□□□□ -1.26
VPS53-207ENST00000570510 OR5AL1P0C617 328 aa7.2□□□□□ -1.26
VPS53-207ENST00000570510 C14orf177Q52M58 125 aa7.2□□□□□ -1.26
VPS53-207ENST00000570510 ZNF506Q5JVG8 444 aa7.2□□□□□ -1.26
VPS53-207ENST00000570510 DAZ4Q86SG3 579 aaKnown RBP7.2□□□□□ -1.26
VPS53-207ENST00000570510 ZFP82Q8N141 532 aa7.2□□□□□ -1.26
VPS53-207ENST00000570510 DAZ3Q9NR90 486 aaKnown RBP7.2□□□□□ -1.26
VPS53-207ENST00000570510 hCG_2014768A0A024R1R8 64 aa7.19□□□□□ -1.26
VPS53-207ENST00000570510 SNAI2O43623 268 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms