RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 HCFC1P51610 2035 aa3.08□□□□□ -1.92
VPS39-212ENST00000570023 SMCHD1A6NHR9 2005 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 NOTCH4Q99466 2003 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 IGLV5-37A0A075B6J1 123 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 TRAV8-3A0A0A6YYJ7 113 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 IGKV1D-43A0A0B4J1Z2 117 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 A0A0J9YXY3 114 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 F8WEM9 126 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 M0R3E3 92 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 VCYO14598 125 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 PPP1R17O96001 155 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 IGLV2-11P01706 119 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 BAALC-AS2P0C853 105 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 MIFP14174 115 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 FXYD7P58549 80 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 IGLV3-21P80748 117 aaPredicted RBP3.07□□□□□ -1.92
VPS39-212ENST00000570023 THAP8Q8NA92 274 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 RNF185Q96GF1 192 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 TMEM141Q96I45 108 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 OBSCN-AS1Q96MR7 158 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 AMELXQ99217 191 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 TIMM17AQ99595 171 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 SPRR3Q9UBC9 169 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 MGAMO43451 1857 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 ARHGAP21Q5T5U3 1957 aa3.07□□□□□ -1.92
VPS39-212ENST00000570023 IGHV5-51A0A0C4DH38 117 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 IGIPA6NJ69 53 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 H7C2G1 150 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 I3L3M4 83 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 FSTL3O95633 263 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 IGHV4-30-4P0DP06 118 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 BRWD1-AS2P59051 145 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 RPL36AP83881 106 aaKnown RBP3.06□□□□□ -1.92
VPS39-212ENST00000570023 CIRBPQ14011 172 aaKnown RBP3.06□□□□□ -1.92
VPS39-212ENST00000570023 C10orf128Q5T292 105 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 FAM53AQ6NSI3 398 aaPredicted RBP3.06□□□□□ -1.92
VPS39-212ENST00000570023 C7orf65Q6ZTY9 151 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 KLHL30-AS1Q8NEE0 82 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 CCL17Q92583 94 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 DIRC1Q969H9 104 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 RNF186Q9NXI6 227 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 PHLDA3Q9Y5J5 127 aa3.06□□□□□ -1.92
VPS39-212ENST00000570023 NCOA6Q14686 2063 aaPredicted RBP3.05□□□□□ -1.92
VPS39-212ENST00000570023 IGKV1D-17A0A075B6S4 117 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 IGKV3D-7A0A0C4DH55 119 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 A8MUN3 132 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 E7EUB6 86 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 M0R381 172 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 SOCS3O14543 225 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 CD28P10747 220 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 CD70P32970 193 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 UBE2AP49459 152 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 PDE6HQ13956 83 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 LPAL2Q16609 132 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 TMEM30BQ3MIR4 351 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 DEFB134Q4QY38 66 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 CLLU1OSQ5K130 101 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 FAM27BQ5VT28 67 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 PRNTQ86SH4 94 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 NKAPP1Q8N9T2 125 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 KLF14Q8TD94 323 aaPredicted RBP3.05□□□□□ -1.92
VPS39-212ENST00000570023 CCL13Q99616 98 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 CXXC4Q9H2H0 198 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 TMEM14BQ9NUH8 114 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 FANCMQ8IYD8 2048 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 PTPRBP23467 1997 aa3.05□□□□□ -1.92
VPS39-212ENST00000570023 GTF3C1Q12789 2109 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 NUMA1Q14980 2115 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 KIF26BQ2KJY2 2108 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 DOCK11Q5JSL3 2073 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 IGHV4-4A0A075B6R2 117 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 A0A087WVE0 104 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 A0A087X002 238 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 IGHV1-45A0A0A0MS14 117 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 LOC100131303A0A0U1RQF7 123 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 F6UB75 175 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 CCL4P13236 92 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 CD59P13987 128 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 MT3P25713 68 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 FUSP35637 526 aaKnown RBP eCLIP3.04□□□□□ -1.92
VPS39-212ENST00000570023 RPL28P46779 137 aaKnown RBP3.04□□□□□ -1.92
VPS39-212ENST00000570023 CRIP1P50238 77 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 PRCDQ00LT1 54 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 KIAA0087Q14695 138 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 CLEC19AQ6UXS0 136 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 PATE2Q6UY27 113 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 TMEM61Q8N0U2 210 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 CLEC2BQ92478 149 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 COX14Q96I36 57 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 SMIM2Q9BVW6 85 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 BPESC1Q9GZL8 116 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 CYP4F30PQ9H0H9 118 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 LINC00846Q9NV44 126 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 SMAD5-AS1Q9Y6J3 95 aa3.04□□□□□ -1.92
VPS39-212ENST00000570023 IGLV4-69A0A075B6H9 119 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 TRAV23DV6A0A075B6W5 121 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 IGKV1OR2-108A0A075B7D4 117 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 A6NN06 94 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 TRBV12-3P01733 135 aa3.03□□□□□ -1.92
VPS39-212ENST00000570023 MIAQ16674 131 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms