RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SPTSSAQ969W0 71 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 DSCR8Q96T75 97 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 TIMM21Q9BVV7 248 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 TMEM242Q9NWH2 141 aa0.59□□□□□ -2.31
VPS35-207ENST00000568191 RBBP6Q7Z6E9 1792 aaKnown RBP0.59□□□□□ -2.32
VPS35-207ENST00000568191 PXDNLA1KZ92 1463 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 MED14O60244 1454 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 ADGRL2O95490 1459 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 CECR2Q9BXF3 1484 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 PARP14Q460N5 1801 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 SBF2Q86WG5 1849 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 TET3O43151 1660 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 DISP1Q96F81 1524 aa0.59□□□□□ -2.32
VPS35-207ENST00000568191 TNS1Q9HBL0 1735 aaKnown RBP0.58□□□□□ -2.32
VPS35-207ENST00000568191 MYO7BQ6PIF6 2116 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 RTEL1-TNFRSF6BF6WH68 1400 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 DAPK1P53355 1430 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 NSD3Q9BZ95 1437 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 TECTAO75443 2155 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 TRAV2A0A0B4J234 112 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 TRAV17A0A0B4J275 112 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 A0A1W2PRS3 328 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 TCRBV3S1A0A5B6 114 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 SNCGO76070 127 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 NDUFB6O95139 128 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 GYPBP06028 91 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 PIRTP0C851 137 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 PIPP12273 146 aaPredicted RBP0.58□□□□□ -2.32
VPS35-207ENST00000568191 BRS3P32247 399 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 NPC2P61916 151 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 MIR22HGQ0VDD5 57 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 Q1T7F1 81 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 C1orf137Q5JT78 98 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 SPANXN1Q5VSR9 72 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 C12orf73Q69YU5 71 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.58□□□□□ -2.32
VPS35-207ENST00000568191 Q6ZRN7 208 aaPredicted RBP0.58□□□□□ -2.32
VPS35-207ENST00000568191 C9orf62Q8N4C0 152 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 Q8N8P6 123 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 C10orf105Q8TEF2 133 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 DYNLRB2Q8TF09 96 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 AQP10Q96PS8 301 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 NDUFA12Q9UI09 145 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 GAPVD1Q14C86 1478 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 TEX14Q8IWB6 1497 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 FYCO1Q9BQS8 1478 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 ZNF142P52746 1687 aaPredicted RBP0.58□□□□□ -2.32
VPS35-207ENST00000568191 DCAF1Q9Y4B6 1507 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 ARAP2Q8WZ64 1704 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 DLG5Q8TDM6 1919 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 CACNA1BQ00975 2339 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 JMJD1CQ15652 2540 aa0.58□□□□□ -2.32
VPS35-207ENST00000568191 RGPD4Q7Z3J3 1758 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 NOTCH1P46531 2555 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 CADP27708 2225 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 ASXL3Q9C0F0 2248 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 PSME4Q14997 1843 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 CPSF1Q10570 1443 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 C10orf71Q711Q0 1435 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 CASKIN1Q8WXD9 1431 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 CTTNBP2Q8WZ74 1663 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 CCDC18Q5T9S5 1454 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 MAGI1Q96QZ7 1491 aaPredicted RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 TRBV6-8A0A0A6YYG3 113 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 UBE2L5PA0A1B0GUS4 154 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 RBAKDNA6NC62 111 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 FAM24AA6NFZ4 105 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 TMEM262E9PQX1 116 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 F8W1H4 67 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 LYNX1P0DP58 116 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 PRB4P10163 310 aaPredicted RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 POLR2JP52435 117 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 UBA52P62987 128 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 UBE2L3P68036 154 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 INSL4Q14641 139 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 S100A7L2Q5SY68 101 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 SLC48A1Q6P1K1 146 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 C5orf38Q86SI9 138 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 OR10AG1Q8NH19 301 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 ZNF431Q8TF32 576 aaPredicted RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 TSKUQ8WUA8 353 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 PPDPFLQ8WWR9 84 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 PATE1Q8WXA2 126 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 TMEM141Q96I45 108 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 LINC00052Q96N35 136 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 Q9H521 79 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 FAIMQ9NVQ4 179 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 V9GYS6 101 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 MYH4Q9Y623 1939 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 MON2Q7Z3U7 1717 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 RGPD3A6NKT7 1758 aaPredicted RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 PPLO60437 1756 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 DLEC1Q9Y238 1755 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 GOLGA4Q13439 2230 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 LAMC3Q9Y6N6 1575 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 KIF20BQ96Q89 1820 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 TNRC6BQ9UPQ9 1833 aaKnown RBP0.57□□□□□ -2.32
VPS35-207ENST00000568191 ARFGEF1Q9Y6D6 1849 aa0.57□□□□□ -2.32
VPS35-207ENST00000568191 PDCD11Q14690 1871 aaKnown RBP0.56□□□□□ -2.32
VPS35-207ENST00000568191 ABCC5O15440 1437 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms