RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 NHLH2Q02577 135 aa10.53□□□□□ -0.72
CDH3-205ENST00000566808 AP5S1Q9NUS5 200 aa10.53□□□□□ -0.72
CDH3-205ENST00000566808 IL36BQ9NZH7 164 aa10.53□□□□□ -0.72
CDH3-205ENST00000566808 CENPXA8MT69 81 aa10.52□□□□□ -0.73
CDH3-205ENST00000566808 IL15RAQ13261 267 aa10.52□□□□□ -0.73
CDH3-205ENST00000566808 PQLC2Q6ZP29 291 aa10.52□□□□□ -0.73
CDH3-205ENST00000566808 GTSF1Q8WW33 167 aa10.52□□□□□ -0.73
CDH3-205ENST00000566808 A0A087WWL8 130 aa10.51□□□□□ -0.73
CDH3-205ENST00000566808 K7EQM0 130 aa10.51□□□□□ -0.73
CDH3-205ENST00000566808 CLPSL2Q6UWE3 100 aa10.51□□□□□ -0.73
CDH3-205ENST00000566808 CHCHD5Q9BSY4 110 aa10.51□□□□□ -0.73
CDH3-205ENST00000566808 IGKV3D-20A0A0C4DH25 116 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 H3BVH4 76 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 PTTG1O95997 202 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 TCRBP04435 133 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 C5orf17Q8NAS9 161 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 OR11H4Q8NGC9 324 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 OR10G8Q8NGN5 311 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 PSG8Q9UQ74 426 aa10.5□□□□□ -0.73
CDH3-205ENST00000566808 EIF3GO75821 320 aaKnown RBP eCLIP10.49□□□□□ -0.73
CDH3-205ENST00000566808 TCRAP04437 139 aa10.49□□□□□ -0.73
CDH3-205ENST00000566808 FLI1Q01543 452 aaPredicted RBP10.48□□□□□ -0.73
CDH3-205ENST00000566808 LINC00269Q8N2A0 174 aa10.48□□□□□ -0.73
CDH3-205ENST00000566808 SFRP2Q96HF1 295 aa10.48□□□□□ -0.73
CDH3-205ENST00000566808 SLPIP03973 132 aa10.47□□□□□ -0.73
CDH3-205ENST00000566808 PRNTQ86SH4 94 aa10.47□□□□□ -0.73
CDH3-205ENST00000566808 SEC22CQ9BRL7 303 aa10.47□□□□□ -0.73
CDH3-205ENST00000566808 RBX1P62877 108 aa10.46□□□□□ -0.73
CDH3-205ENST00000566808 SAPCD1Q5SSQ6 148 aa10.46□□□□□ -0.73
CDH3-205ENST00000566808 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.46□□□□□ -0.73
CDH3-205ENST00000566808 B4DEV8 164 aa10.45□□□□□ -0.74
CDH3-205ENST00000566808 MAJINQ3KP22 176 aa10.45□□□□□ -0.74
CDH3-205ENST00000566808 DNLZQ5SXM8 178 aa10.45□□□□□ -0.74
CDH3-205ENST00000566808 IGLV10-54A0A075B6I4 117 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 A0A1W2PPV4 95 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 ARMS2P0C7Q2 107 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 COX6A2Q02221 97 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 STPG4Q8N801 248 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 VAX2Q9UIW0 290 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 PHLDA3Q9Y5J5 127 aa10.44□□□□□ -0.74
CDH3-205ENST00000566808 IGKV2-24A0A0C4DH68 120 aa10.43□□□□□ -0.74
CDH3-205ENST00000566808 FABP5P3A8MUU1 101 aa10.43□□□□□ -0.74
CDH3-205ENST00000566808 REG3AQ06141 175 aa10.43□□□□□ -0.74
CDH3-205ENST00000566808 SRSF9Q13242 221 aaKnown RBP eCLIP10.43□□□□□ -0.74
CDH3-205ENST00000566808 TMEM97Q5BJF2 176 aa10.43□□□□□ -0.74
CDH3-205ENST00000566808 NEXN-AS1Q8NBZ9 246 aa10.43□□□□□ -0.74
CDH3-205ENST00000566808 TRAV6A0A075B6T7 132 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 TRAV8-4A0A0B4J246 113 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 MUC21A0A0G2JKD1 596 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 M0R381 172 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 NDUFS6O75380 124 aaKnown RBP10.42□□□□□ -0.74
CDH3-205ENST00000566808 P01737 135 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 ARL14EPLP0DKL9 152 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 GZMBP10144 247 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
CDH3-205ENST00000566808 ZFP82Q8N141 532 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 LYPD6BQ8NI32 183 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 RBM38Q9H0Z9 239 aaKnown RBP10.42□□□□□ -0.74
CDH3-205ENST00000566808 NUDT15Q9NV35 164 aa10.42□□□□□ -0.74
CDH3-205ENST00000566808 FAM231BA6NCW3 169 aa10.41□□□□□ -0.74
CDH3-205ENST00000566808 TPT1P13693 172 aaKnown RBP10.41□□□□□ -0.74
CDH3-205ENST00000566808 SCGB1C1Q8TD33 95 aa10.41□□□□□ -0.74
CDH3-205ENST00000566808 TRBV25-1A0A075B6N4 114 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 KRBOX1C9JBD0 128 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 H7C1H1 209 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 HMGB3O15347 200 aaKnown RBP10.4□□□□□ -0.74
CDH3-205ENST00000566808 RAB4BP61018 213 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 GAGE6Q13070 117 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 PRR27Q6MZM9 219 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 Q6ZRP5 223 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 NTM-AS1Q6ZSK4 140 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 SDHCQ99643 169 aaPredicted RBP10.4□□□□□ -0.74
CDH3-205ENST00000566808 EPDR1Q9UM22 224 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 ARL2-SNX15V9GYD0 113 aa10.4□□□□□ -0.74
CDH3-205ENST00000566808 M0R036 132 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 IL7P13232 177 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 RAB2AP61019 212 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 ZNF56Q15929 161 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 LRRC37A5PQ49AS3 106 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 PRSS3P2Q8NHM4 247 aa10.39□□□□□ -0.75
CDH3-205ENST00000566808 RPS10P46783 165 aaKnown RBP10.38□□□□□ -0.75
CDH3-205ENST00000566808 C15orf56Q8N910 161 aa10.38□□□□□ -0.75
CDH3-205ENST00000566808 GRIFINA4D1Z8 144 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 H0YIZ8 118 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 LYRM1O43325 122 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 IFNA7P01567 189 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 SUMO1P63165 101 aaKnown RBP10.37□□□□□ -0.75
CDH3-205ENST00000566808 SUN5Q8TC36 379 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 LINC00474Q9P2X8 69 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 HSPB11Q9Y547 144 aa10.37□□□□□ -0.75
CDH3-205ENST00000566808 TRBV6-1A0A0K0K1D8 114 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 STAG3L2P0CL84 134 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 STAG3L3P0CL85 134 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 IQCJQ1A5X6 159 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 Q86TA4 180 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 ZNF664Q8N3J9 261 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 C20orf203Q8NBC4 194 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 DERL1Q9BUN8 251 aa10.36□□□□□ -0.75
CDH3-205ENST00000566808 A0A096LNI7 61 aa10.35□□□□□ -0.75
CDH3-205ENST00000566808 TRAV26-2A0A0B4J265 109 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms