RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 OR10AG1Q8NH19 301 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 KRTAP4-5Q9BYR2 181 aa12.01□□□□□ -0.49
CLN3-217ENST00000565354 MUC21A0A0G2JKD1 596 aa12□□□□□ -0.49
CLN3-217ENST00000565354 MUC21A0A140T8X8 626 aa12□□□□□ -0.49
CLN3-217ENST00000565354 RHODO00212 210 aa12□□□□□ -0.49
CLN3-217ENST00000565354 GATA1P15976 413 aaPredicted RBP12□□□□□ -0.49
CLN3-217ENST00000565354 LINC01551Q86U37 167 aa12□□□□□ -0.49
CLN3-217ENST00000565354 PRADC1Q9BSG0 188 aa12□□□□□ -0.49
CLN3-217ENST00000565354 JPT2Q9H910 190 aa12□□□□□ -0.49
CLN3-217ENST00000565354 NAT8Q9UHE5 227 aa12□□□□□ -0.49
CLN3-217ENST00000565354 A0A1W2PPQ1 181 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 GYPEP15421 78 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 ADIRFQ15847 76 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 MRPL23Q16540 153 aaKnown RBP11.99□□□□□ -0.49
CLN3-217ENST00000565354 ZFP2Q6ZN57 461 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 FAM231DQ6ZW35 169 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 SFRP2Q96HF1 295 aa11.99□□□□□ -0.49
CLN3-217ENST00000565354 SSBP4Q9BWG4 385 aaPredicted RBP11.99□□□□□ -0.49
CLN3-217ENST00000565354 A0A087WWL8 130 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 A0A096LPF7 62 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 RTL8CO15255 209 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 IGLC6P0CF74 106 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 SRIP30626 198 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 RHOHQ15669 191 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 RNF212Q495C1 297 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 C15orf54Q8N8G6 183 aa11.98□□□□□ -0.49
CLN3-217ENST00000565354 F2Z2F3 143 aa11.97□□□□□ -0.49
CLN3-217ENST00000565354 SMIM17P0DL12 118 aa11.97□□□□□ -0.49
CLN3-217ENST00000565354 CACNG7P62955 275 aa11.97□□□□□ -0.49
CLN3-217ENST00000565354 LYZL1Q6UWQ5 148 aa11.97□□□□□ -0.49
CLN3-217ENST00000565354 SAMD10Q9BYL1 202 aa11.97□□□□□ -0.49
CLN3-217ENST00000565354 TRBV6-4A0A1B0GX49 114 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 A8MWL6 223 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 NXPH4O95158 308 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 RPL23P62829 140 aaKnown RBP11.96□□□□□ -0.49
CLN3-217ENST00000565354 SLC25A29Q8N8R3 303 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 AP1S3Q96PC3 154 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 OSTCQ9NRP0 149 aa11.96□□□□□ -0.49
CLN3-217ENST00000565354 K7EQD1 137 aa11.95□□□□□ -0.5
CLN3-217ENST00000565354 NEGR1Q7Z3B1 354 aa11.95□□□□□ -0.5
CLN3-217ENST00000565354 ISOC2Q96AB3 205 aa11.95□□□□□ -0.5
CLN3-217ENST00000565354 HSPG2P98160 4391 aa11.95□□□□□ -0.5
CLN3-217ENST00000565354 NACAE9PAV3 2078 aa11.95□□□□□ -0.5
CLN3-217ENST00000565354 LOC100131303A0A0U1RQF7 123 aa11.94□□□□□ -0.5
CLN3-217ENST00000565354 FAM3BP58499 235 aaPredicted RBP11.94□□□□□ -0.5
CLN3-217ENST00000565354 ZNF56Q15929 161 aa11.94□□□□□ -0.5
CLN3-217ENST00000565354 CT83Q5H943 113 aa11.94□□□□□ -0.5
CLN3-217ENST00000565354 BORCS7Q96B45 105 aa11.94□□□□□ -0.5
CLN3-217ENST00000565354 F5H697 171 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 CRYGDP07320 174 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 TRGC1P0CF51 173 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 CTRLP40313 264 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 ESRGQ1W209 222 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 SH2D6Q7Z4S9 175 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 C14orf178Q8N769 122 aaPredicted RBP11.93□□□□□ -0.5
CLN3-217ENST00000565354 OR10G8Q8NGN5 311 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 LINC00588Q9Y4M8 146 aa11.93□□□□□ -0.5
CLN3-217ENST00000565354 TWIST1Q15672 202 aa11.92□□□□□ -0.5
CLN3-217ENST00000565354 UFSP1Q6NVU6 142 aa11.92□□□□□ -0.5
CLN3-217ENST00000565354 M0R2N4 97 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 MGPP08493 103 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 NTF3P20783 257 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 WDR73Q6P4I2 378 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 UQCC3Q6UW78 93 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 Q6ZSN1 163 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 TSKUQ8WUA8 353 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 PGLYRP4Q96LB8 373 aa11.91□□□□□ -0.5
CLN3-217ENST00000565354 IGLV2-18A0A075B6J9 118 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GAGE12JA6NER3 117 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 RAB4BP61018 213 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GAGE1Q13065 139 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GAGE4Q13068 117 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GAGE5Q13069 117 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GAGE13Q4V321 117 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 SMIM15Q7Z3B0 74 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 COMMD7Q86VX2 200 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 GTSF1Q8WW33 167 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 MSRB1Q9NZV6 116 aa11.9□□□□□ -0.5
CLN3-217ENST00000565354 MRPS16Q9Y3D3 137 aaKnown RBP11.9□□□□□ -0.5
CLN3-217ENST00000565354 LYPD5Q6UWN5 251 aa11.89□□□□□ -0.51
CLN3-217ENST00000565354 GFRA4Q9GZZ7 299 aa11.89□□□□□ -0.51
CLN3-217ENST00000565354 V9GYV3 84 aa11.89□□□□□ -0.51
CLN3-217ENST00000565354 HIGD1CA8MV81 97 aa11.88□□□□□ -0.51
CLN3-217ENST00000565354 PNRC1Q12796 327 aaPredicted RBP11.88□□□□□ -0.51
CLN3-217ENST00000565354 ATP6V0E2Q8NHE4 81 aa11.88□□□□□ -0.51
CLN3-217ENST00000565354 DPH3P1Q9H4G8 78 aa11.88□□□□□ -0.51
CLN3-217ENST00000565354 FAM231BA6NCW3 169 aa11.87□□□□□ -0.51
CLN3-217ENST00000565354 EVI2AP22794 236 aa11.87□□□□□ -0.51
CLN3-217ENST00000565354 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
CLN3-217ENST00000565354 ZNRF2Q8NHG8 242 aa11.87□□□□□ -0.51
CLN3-217ENST00000565354 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
CLN3-217ENST00000565354 CNFNQ9BYD5 112 aa11.87□□□□□ -0.51
CLN3-217ENST00000565354 TRBV10-1A0A0K0K1A3 114 aa11.86□□□□□ -0.51
CLN3-217ENST00000565354 F8W036 122 aa11.86□□□□□ -0.51
CLN3-217ENST00000565354 UPK3BQ9BT76 320 aa11.86□□□□□ -0.51
CLN3-217ENST00000565354 Q9H8V8 135 aa11.86□□□□□ -0.51
CLN3-217ENST00000565354 KIF25-AS1Q9Y6Z4 181 aa11.86□□□□□ -0.51
CLN3-217ENST00000565354 A0A1B0GUT8 65 aa11.85□□□□□ -0.51
CLN3-217ENST00000565354 H7C1H1 209 aa11.85□□□□□ -0.51
CLN3-217ENST00000565354 PPP1R2P9O14990 202 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms