RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GAGE4Q13068 117 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 GAGE5Q13069 117 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 GAGE13Q4V321 117 aa9.93□□□□□ -0.82
CLN3-213ENST00000565047 TMSB15BA0A087X1C1 80 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 A0A1B0GV50 99 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 RHODO00212 210 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 EREGO14944 169 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 IGHV3-30P01768 117 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 IGHV3-33P01772 117 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 S100A9P06702 114 aaKnown RBP9.92□□□□□ -0.82
CLN3-213ENST00000565047 IGHV3-30-3P0DP02 117 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 IGHV3-30-5P0DP03 117 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 SYT8Q8NBV8 401 aa9.92□□□□□ -0.82
CLN3-213ENST00000565047 SSBP4Q9BWG4 385 aaPredicted RBP9.92□□□□□ -0.82
CLN3-213ENST00000565047 A0A087WWL8 130 aa9.91□□□□□ -0.82
CLN3-213ENST00000565047 TRAV1-1A0A0B4J248 108 aa9.91□□□□□ -0.82
CLN3-213ENST00000565047 CXCL1P09341 107 aa9.91□□□□□ -0.82
CLN3-213ENST00000565047 RPL19P84098 196 aaKnown RBP9.91□□□□□ -0.82
CLN3-213ENST00000565047 LAGE3Q14657 143 aa9.91□□□□□ -0.82
CLN3-213ENST00000565047 PHLDA3Q9Y5J5 127 aa9.91□□□□□ -0.82
CLN3-213ENST00000565047 M0R381 172 aa9.9□□□□□ -0.82
CLN3-213ENST00000565047 TPT1P13693 172 aaKnown RBP9.9□□□□□ -0.82
CLN3-213ENST00000565047 EIF5AP63241 154 aaKnown RBP9.9□□□□□ -0.82
CLN3-213ENST00000565047 BAGE2Q86Y30 109 aa9.9□□□□□ -0.82
CLN3-213ENST00000565047 C11orf52Q96A22 123 aa9.9□□□□□ -0.82
CLN3-213ENST00000565047 SNAI2O43623 268 aa9.89□□□□□ -0.83
CLN3-213ENST00000565047 ZFP82Q8N141 532 aa9.89□□□□□ -0.83
CLN3-213ENST00000565047 A0A087WWC5 75 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 TRBV10-1A0A0K0K1A3 114 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 IGLV2-8P01709 118 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 RPL35P42766 123 aaKnown RBP9.88□□□□□ -0.83
CLN3-213ENST00000565047 FAM74A4Q5TZK3 123 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 DAZ4Q86SG3 579 aaKnown RBP9.88□□□□□ -0.83
CLN3-213ENST00000565047 TCTE3Q8IZS6 198 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 Q8N814 137 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 OR10AG1Q8NH19 301 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 DERL1Q9BUN8 251 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 Q9HAA7 133 aa9.88□□□□□ -0.83
CLN3-213ENST00000565047 DAZ3Q9NR90 486 aaKnown RBP9.88□□□□□ -0.83
CLN3-213ENST00000565047 PFDN1O60925 122 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 OR5AL1P0C617 328 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 GCSHP23434 173 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 SULT1A2P50226 295 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 RAB5CP51148 216 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 UBE2D3P61077 147 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 UBE2D2P62837 147 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 WFDC2Q14508 124 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 PRR27Q6MZM9 219 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 NIT1Q86X76 327 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 OR10G8Q8NGN5 311 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 KIF25-AS1Q9Y6Z4 181 aa9.87□□□□□ -0.83
CLN3-213ENST00000565047 NTN5Q8WTR8 489 aaPredicted RBP9.86□□□□□ -0.83
CLN3-213ENST00000565047 MANBALQ9NQG1 85 aa9.86□□□□□ -0.83
CLN3-213ENST00000565047 GNG13Q9P2W3 67 aa9.86□□□□□ -0.83
CLN3-213ENST00000565047 TRBV7-3A0A075B6L6 115 aa9.85□□□□□ -0.83
CLN3-213ENST00000565047 PSCAO43653 123 aa9.85□□□□□ -0.83
CLN3-213ENST00000565047 RAB4BP61018 213 aa9.85□□□□□ -0.83
CLN3-213ENST00000565047 Q6ZNX1 250 aa9.85□□□□□ -0.83
CLN3-213ENST00000565047 DNAJC30Q96LL9 226 aa9.85□□□□□ -0.83
CLN3-213ENST00000565047 HERC1Q15751 4861 aa9.84□□□□□ -0.83
CLN3-213ENST00000565047 C19orf71A6NCJ1 209 aa9.84□□□□□ -0.83
CLN3-213ENST00000565047 TRBV20OR9-2A0A075B6H5 130 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 TRAV8-3A0A0A6YYJ7 113 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 MUC21A0A0G2JKD1 596 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 MUC21A0A140T8X8 626 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 C1QBP02746 253 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 NEXN-AS1Q8NBZ9 246 aa9.83□□□□□ -0.84
CLN3-213ENST00000565047 IGLV5-52A0A0A0MRZ9 124 aa9.82□□□□□ -0.84
CLN3-213ENST00000565047 IGLC6P0CF74 106 aa9.82□□□□□ -0.84
CLN3-213ENST00000565047 RPL36AP83881 106 aaKnown RBP9.82□□□□□ -0.84
CLN3-213ENST00000565047 CENPWQ5EE01 88 aa9.82□□□□□ -0.84
CLN3-213ENST00000565047 EIF5AL1Q6IS14 154 aaKnown RBP9.82□□□□□ -0.84
CLN3-213ENST00000565047 RPL36ALQ969Q0 106 aaKnown RBP9.82□□□□□ -0.84
CLN3-213ENST00000565047 TM2D2Q9BX73 214 aa9.82□□□□□ -0.84
CLN3-213ENST00000565047 RAB19A4D1S5 217 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 EPM2AB3EWF7 344 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 MEF2BQ02080 365 aaPredicted RBP9.81□□□□□ -0.84
CLN3-213ENST00000565047 ATRAIDQ6UW56 229 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 SLC51BQ86UW2 128 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 SMIM12Q96EX1 92 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 CHCHD7Q9BUK0 85 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 FAM30AQ9NZY2 134 aa9.81□□□□□ -0.84
CLN3-213ENST00000565047 MYCBP2O75592 4640 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 TRBV6-8A0A0A6YYG3 113 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 GZMBP10144 247 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 TOR2AQ5JU69 321 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 SPANXN1Q5VSR9 72 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 TMEM70Q9BUB7 260 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 VAX2Q9UIW0 290 aa9.8□□□□□ -0.84
CLN3-213ENST00000565047 PDE6DO43924 150 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 ZNF56Q15929 161 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 Q6ZSA8 131 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 NTM-AS1Q6ZSK4 140 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 C9orf62Q8N4C0 152 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 KLK12Q9UKR0 248 aa9.79□□□□□ -0.84
CLN3-213ENST00000565047 RBFOX3A6NFN3 312 aa9.78□□□□□ -0.84
CLN3-213ENST00000565047 BCL2P10415 239 aa9.78□□□□□ -0.84
CLN3-213ENST00000565047 HAMPP81172 84 aa9.78□□□□□ -0.84
CLN3-213ENST00000565047 TEX46H3BTG2 121 aa9.77□□□□□ -0.85
CLN3-213ENST00000565047 M0QY20 66 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms