RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SPANXN1Q5VSR9 72 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 UFSP1Q6NVU6 142 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 LYPD6BQ8NI32 183 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 SSBP4Q9BWG4 385 aaPredicted RBP9.15□□□□□ -0.94
CLK3-213ENST00000563842 SAMD10Q9BYL1 202 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 KRTAP1-5Q9BYS1 174 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 GTSF1LQ9H1H1 148 aa9.15□□□□□ -0.94
CLK3-213ENST00000563842 TMEM250H0YL14 139 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 DNAH10OSP0CZ25 163 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 LELP1Q5T871 98 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 NFE4Q86UQ8 179 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 C10orf126Q8N4M7 172 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 DNAH2Q9P225 4427 aa9.14□□□□□ -0.95
CLK3-213ENST00000563842 A0A087WWL8 130 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 IGHV3-38A0A0C4DH36 116 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 C19orf71A6NCJ1 209 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 GAGE12JA6NER3 117 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 P01737 135 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 CRYGDP07320 174 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 TNP2Q05952 138 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 GAGE1Q13065 139 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 GAGE4Q13068 117 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 GAGE5Q13069 117 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 GAGE13Q4V321 117 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 OR10J3Q5JRS4 329 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 Q6ZSN1 163 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 WFDC10BQ8IUB3 73 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 OR2D3Q8NGH3 330 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 OR10AG1Q8NH19 301 aa9.13□□□□□ -0.95
CLK3-213ENST00000563842 HECTD4Q9Y4D8 3996 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 A0A087WWC5 75 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 TRBV10-1A0A0K0K1A3 114 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 NDUFS6O75380 124 aaKnown RBP9.12□□□□□ -0.95
CLK3-213ENST00000563842 SMIM17P0DL12 118 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 LINC00315P59091 139 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 RAB4BP61018 213 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 C14orf178Q8N769 122 aaPredicted RBP9.12□□□□□ -0.95
CLK3-213ENST00000563842 FER1L6-AS1Q8NA97 138 aa9.12□□□□□ -0.95
CLK3-213ENST00000563842 TRBV20OR9-2A0A075B6H5 130 aa9.11□□□□□ -0.95
CLK3-213ENST00000563842 F2Z2F3 143 aa9.11□□□□□ -0.95
CLK3-213ENST00000563842 CACNG7P62955 275 aa9.11□□□□□ -0.95
CLK3-213ENST00000563842 RPL36AP83881 106 aaKnown RBP9.11□□□□□ -0.95
CLK3-213ENST00000563842 LINC01556Q5JQF7 62 aa9.11□□□□□ -0.95
CLK3-213ENST00000563842 RPL36ALQ969Q0 106 aaKnown RBP9.11□□□□□ -0.95
CLK3-213ENST00000563842 EIF5A2Q9GZV4 153 aaKnown RBP9.11□□□□□ -0.95
CLK3-213ENST00000563842 FAT2Q9NYQ8 4349 aa9.11□□□□□ -0.95
CLK3-213ENST00000563842 LINC00694P0DN24 101 aa9.1□□□□□ -0.95
CLK3-213ENST00000563842 ZNF56Q15929 161 aa9.1□□□□□ -0.95
CLK3-213ENST00000563842 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.1□□□□□ -0.95
CLK3-213ENST00000563842 AP1S3Q96PC3 154 aa9.1□□□□□ -0.95
CLK3-213ENST00000563842 TPPP3Q9BW30 176 aa9.1□□□□□ -0.95
CLK3-213ENST00000563842 MSRB1Q9NZV6 116 aa9.1□□□□□ -0.95
CLK3-213ENST00000563842 TRBV7-3A0A075B6L6 115 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 EREGO14944 169 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 IGLC6P0CF74 106 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 TOR2AQ5JU69 321 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 NUDT10Q8NFP7 164 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 OCC1Q8TAD7 63 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 NUDT11Q96G61 164 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 FAM210AQ96ND0 272 aa9.09□□□□□ -0.95
CLK3-213ENST00000563842 MUC21A0A0G2JKD1 596 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 MUC21A0A140T8X8 626 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 F5H697 171 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 GZMBP10144 247 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 SSTP61278 116 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 WDR73Q6P4I2 378 aa9.08□□□□□ -0.96
CLK3-213ENST00000563842 TRGC1P0CF51 173 aa9.07□□□□□ -0.96
CLK3-213ENST00000563842 CEBPGP53567 150 aa9.07□□□□□ -0.96
CLK3-213ENST00000563842 Q6ZRN7 208 aaPredicted RBP9.07□□□□□ -0.96
CLK3-213ENST00000563842 OR10G8Q8NGN5 311 aa9.07□□□□□ -0.96
CLK3-213ENST00000563842 RPP21Q9H633 154 aaKnown RBP9.07□□□□□ -0.96
CLK3-213ENST00000563842 IBA57-AS1B1ANH7 110 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 H7C1H1 209 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 K7EN84 100 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 ERVFC1-1P60608 527 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 UBE2D3P61077 147 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 UBE2D2P62837 147 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 TEX261Q6UWH6 196 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 LYZL1Q6UWQ5 148 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 SMIM7Q9BQ49 75 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 Q9UF83 564 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 URGCP-MRPS24S4R325 110 aa9.06□□□□□ -0.96
CLK3-213ENST00000563842 PKD1P98161 4303 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 GATCO43716 136 aaKnown RBP9.05□□□□□ -0.96
CLK3-213ENST00000563842 IGHV3-30P01768 117 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 IGHV3-33P01772 117 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 IGHV3-30-3P0DP02 117 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 IGHV3-30-5P0DP03 117 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 LAGE3Q14657 143 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 TMEM97Q5BJF2 176 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 FAM231DQ6ZW35 169 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 RNASE7Q9H1E1 156 aaKnown RBP9.05□□□□□ -0.96
CLK3-213ENST00000563842 KIF25-AS1Q9Y6Z4 181 aa9.05□□□□□ -0.96
CLK3-213ENST00000563842 ZNF727A8MUV8 499 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 A8MWL6 223 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 C16orf90A8MZG2 172 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 NTF3P20783 257 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 KCNIP4Q6PIL6 250 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 NEXN-AS1Q8NBZ9 246 aa9.04□□□□□ -0.96
CLK3-213ENST00000563842 DPH3P1Q9H4G8 78 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms