RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TGP01266 2768 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 TRAV9-1A0A075B6T8 112 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 A0A087WWL8 130 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 CRYGDP07320 174 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 OR4C5Q8NGB2 326 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 BTF3L4Q96K17 158 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 YPEL4Q96NS1 127 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 KIF25-AS1Q9Y6Z4 181 aa11.72□□□□□ -0.53
VPS4A-202ENST00000562754 TRGC1P0CF51 173 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 EVI2AP22794 236 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 HBBP68871 147 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 ELOBQ15370 118 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 ATP5L2Q7Z4Y8 100 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 C14orf178Q8N769 122 aaPredicted RBP11.71□□□□□ -0.53
VPS4A-202ENST00000562754 SMCO4Q9NRQ5 59 aa11.71□□□□□ -0.53
VPS4A-202ENST00000562754 IGHV3-73A0A0B4J1V6 119 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 ATP5G1P05496 136 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 HOXA5P20719 270 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 CAMPP49913 170 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 LINC00315P59091 139 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 FAM74A4Q5TZK3 123 aa11.7□□□□□ -0.54
VPS4A-202ENST00000562754 TGIF2-C20orf24A0A0A6YYL0 155 aa11.69□□□□□ -0.54
VPS4A-202ENST00000562754 A0A1B0GW15 77 aa11.69□□□□□ -0.54
VPS4A-202ENST00000562754 HTN3P15516 51 aa11.69□□□□□ -0.54
VPS4A-202ENST00000562754 GATD1Q8NB37 220 aa11.69□□□□□ -0.54
VPS4A-202ENST00000562754 RHODO00212 210 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 FHL2Q14192 279 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 ZFP2Q6ZN57 461 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 Q6ZSN1 163 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 TMEM191AQ9H0A3 160 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 DPH3P1Q9H4G8 78 aa11.68□□□□□ -0.54
VPS4A-202ENST00000562754 TRBV24-1A0A075B6N3 115 aa11.67□□□□□ -0.54
VPS4A-202ENST00000562754 MGPP08493 103 aa11.67□□□□□ -0.54
VPS4A-202ENST00000562754 F5H768 121 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 S100A8P05109 93 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 SMIM17P0DL12 118 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 GATA1P15976 413 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-202ENST00000562754 ZNF56Q15929 161 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 SMIM15Q7Z3B0 74 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 AMN1Q8IY45 258 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 RNF185Q96GF1 192 aa11.66□□□□□ -0.54
VPS4A-202ENST00000562754 DEFB131BA0A096LNP1 70 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 TRAV10A0A0B4J240 114 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 TRGV4A0A0C4DH28 118 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 CIDEAO60543 219 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 RASL11AQ6T310 242 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 TMEM136Q6ZRR5 245 aa11.65□□□□□ -0.54
VPS4A-202ENST00000562754 FAM104BQ5XKR9 115 aa11.64□□□□□ -0.55
VPS4A-202ENST00000562754 PHLDA1Q8WV24 401 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-202ENST00000562754 RAB4AP20338 218 aa11.63□□□□□ -0.55
VPS4A-202ENST00000562754 RAB4BP61018 213 aa11.63□□□□□ -0.55
VPS4A-202ENST00000562754 SUMO4Q6EEV6 95 aa11.63□□□□□ -0.55
VPS4A-202ENST00000562754 FAM210BQ96KR6 192 aa11.63□□□□□ -0.55
VPS4A-202ENST00000562754 DNAH7Q8WXX0 4024 aa11.63□□□□□ -0.55
VPS4A-202ENST00000562754 TRAV26-2A0A0B4J265 109 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 F5H697 171 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 P0DMU3 169 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 FAM231AP0DMU4 169 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 FAM231CP0DMU5 169 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 CRYBA4P53673 196 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 SLC25A29Q8N8R3 303 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 VSIG2Q96IQ7 327 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 PRO0255Q9UI72 69 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 HHLA3Q9XRX5 114 aa11.62□□□□□ -0.55
VPS4A-202ENST00000562754 TRAV26-1A0A087WT03 109 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 A0A0J9YY99 117 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 TRBV6-4A0A1B0GX49 114 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 COLCA2A8K830 154 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 K7EQD1 137 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 GAS8-AS1O95177 125 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 SLAQ13239 276 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 MRPL51Q4U2R6 128 aaKnown RBP11.61□□□□□ -0.55
VPS4A-202ENST00000562754 WWC2-AS2Q96NR7 200 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 Q9UF83 564 aa11.61□□□□□ -0.55
VPS4A-202ENST00000562754 LOC100131303A0A0U1RQF7 123 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 M0QY20 66 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 NCR2O95944 276 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 HLA-DQA1P01909 254 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 COX19Q49B96 90 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 GNB1LQ9BYB4 327 aa11.6□□□□□ -0.55
VPS4A-202ENST00000562754 SMKR1H3BMG3 65 aa11.59□□□□□ -0.55
VPS4A-202ENST00000562754 PAX4O43316 350 aa11.59□□□□□ -0.55
VPS4A-202ENST00000562754 RHOHQ15669 191 aa11.59□□□□□ -0.55
VPS4A-202ENST00000562754 MT-ND6P03923 174 aa11.58□□□□□ -0.56
VPS4A-202ENST00000562754 CEMP1Q6PRD7 247 aaPredicted RBP11.58□□□□□ -0.56
VPS4A-202ENST00000562754 MUC7Q8TAX7 377 aa11.58□□□□□ -0.56
VPS4A-202ENST00000562754 MRAP2Q96G30 205 aa11.58□□□□□ -0.56
VPS4A-202ENST00000562754 LINC00694P0DN24 101 aa11.57□□□□□ -0.56
VPS4A-202ENST00000562754 GYPEP15421 78 aa11.57□□□□□ -0.56
VPS4A-202ENST00000562754 RPS10P46783 165 aaKnown RBP11.57□□□□□ -0.56
VPS4A-202ENST00000562754 ZFAND6Q6FIF0 208 aa11.57□□□□□ -0.56
VPS4A-202ENST00000562754 NEXN-AS1Q8NBZ9 246 aa11.57□□□□□ -0.56
VPS4A-202ENST00000562754 RPL39LQ96EH5 51 aaKnown RBP11.57□□□□□ -0.56
VPS4A-202ENST00000562754 PRADC1Q9BSG0 188 aa11.57□□□□□ -0.56
VPS4A-202ENST00000562754 MRPL18Q9H0U6 180 aaKnown RBP11.57□□□□□ -0.56
VPS4A-202ENST00000562754 NUPR2A6NF83 97 aa11.56□□□□□ -0.56
VPS4A-202ENST00000562754 D6R8Y8 96 aa11.56□□□□□ -0.56
VPS4A-202ENST00000562754 H7C1H1 209 aa11.56□□□□□ -0.56
VPS4A-202ENST00000562754 APCSP02743 223 aa11.56□□□□□ -0.56
VPS4A-202ENST00000562754 NRACQ8N912 160 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms