RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 TTTY13Q9BZ97 58 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 AGPAT4-IT1Q9H0P7 198 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 DPH3P1Q9H4G8 78 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 SPANXB1Q9NS25 103 aaPredicted RBP1.83□□□□□ -2.12
SPG11-223ENST00000560858 NHP2Q9NX24 153 aaKnown RBP1.83□□□□□ -2.12
SPG11-223ENST00000560858 MRPL35Q9NZE8 188 aaKnown RBP1.83□□□□□ -2.12
SPG11-223ENST00000560858 CEP250Q9BV73 2442 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 CELSR3Q9NYQ7 3312 aa1.83□□□□□ -2.12
SPG11-223ENST00000560858 ANKRD11Q6UB99 2663 aaPredicted RBP1.83□□□□□ -2.12
SPG11-223ENST00000560858 RP1L1Q8IWN7 2480 aaPredicted RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 NBEAQ8NFP9 2946 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 PTPRZ1P23471 2315 aaPredicted RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 CACNA1BQ00975 2339 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 IGLV4-69A0A075B6H9 119 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 A0A087WW49 117 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 TRAV26-2A0A0B4J265 109 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 TRAV21A0A0B4J279 112 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 TRAV40A0A0B4J280 105 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 MYMXA0A1B0GTQ4 84 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 A0A1W2PPR1 153 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 NCBP2LA6PVI3 153 aaKnown RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 KLLNB2CW77 178 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 OR11H12B2RN74 326 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 F8W1H4 67 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 H3BVH4 76 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 H7C1H1 209 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 NDUFA4O00483 81 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 OVOL1O14753 267 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 RTL8CO15255 209 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 LY6HO94772 140 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 PPP1R17O96001 155 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 LGALS1P09382 135 aaKnown RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 CD7P09564 240 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 RNASE3P12724 160 aaKnown RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 SAA4P35542 130 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 ASIPP42127 132 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 EFNA4P52798 201 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 RIPPLY3P57055 190 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 TCTAP57738 103 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 LINC00315P59091 139 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 UBE2D3P61077 147 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 UBE2D2P62837 147 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 C12orf74Q32Q52 190 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 CFAP126Q5VTH2 177 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 MORN3Q6PF18 240 aaPredicted RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 MAPKAPK5-AS1Q8N8E1 139 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 OR11H1Q8NG94 326 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 OR11H2Q8NH07 326 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 MYOZ3Q8TDC0 251 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 LINC00477Q96M19 166 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 ODF3Q96PU9 254 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 MOB4Q9Y3A3 225 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 UFC1Q9Y3C8 167 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 CHTOPQ9Y3Y2 248 aaKnown RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 KIF25-AS1Q9Y6Z4 181 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 EP300Q09472 2414 aaPredicted RBP1.82□□□□□ -2.12
SPG11-223ENST00000560858 LOC400499M0QZD8 3231 aa1.82□□□□□ -2.12
SPG11-223ENST00000560858 TPRP12270 2363 aaKnown RBP1.81□□□□□ -2.12
SPG11-223ENST00000560858 HIVEP3Q5T1R4 2406 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 ZZEF1O43149 2961 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3OR16-8A0A075B7F1 116 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TRAV41A0A0B4J266 112 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 IGHV3-35A0A0C4DH35 117 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TRBV6-5A0A0K0K1A5 114 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 C11orf86A6NJI1 115 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 G3V318 75 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 H3BMG7 143 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 J3QR89 54 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 M0QXV9 152 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 NDUFS8O00217 210 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 CCL21O00585 134 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 NPFFO15130 113 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TSPAN13O95857 204 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 IGF1P05019 195 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 CLEC3BP05452 202 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 CRYGDP07320 174 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 ARL3P36405 182 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 POLR2KP53803 58 aaKnown RBP1.81□□□□□ -2.12
SPG11-223ENST00000560858 UCNP55089 124 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 LINC01547P58512 204 aaPredicted RBP1.81□□□□□ -2.12
SPG11-223ENST00000560858 ATP5G2Q06055 141 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 KLRB1Q12918 225 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 RHOHQ15669 191 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 NSUN5P1Q3KNT7 163 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 TCTEX1D4Q5JR98 221 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 PAPPA-AS1Q5QFB9 102 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 LYRM7Q5U5X0 104 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 SPANXN1Q5VSR9 72 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 SAMD13Q5VXD3 122 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 C2orf66Q6UXQ4 117 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 CLEC19AQ6UXS0 136 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 UNQ9165/PRO28630Q6UXU0 137 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 Q6ZQT7 251 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 NFE4Q86UQ8 179 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 SBSPONQ8IVN8 264 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 OR10J6PQ8NGY7 276 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 RPL39LQ96EH5 51 aaKnown RBP1.81□□□□□ -2.12
SPG11-223ENST00000560858 USMG5Q96IX5 58 aa1.81□□□□□ -2.12
SPG11-223ENST00000560858 C9orf85Q96MD7 179 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms