RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SFT2D1Q8WV19 159 aa6.81□□□□□ -1.32
LDLR-214ENST00000560628 PHLDA3Q9Y5J5 127 aa6.81□□□□□ -1.32
LDLR-214ENST00000560628 LECT2O14960 151 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 LTAP01374 205 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 TPT1P13693 172 aaKnown RBP6.8□□□□□ -1.32
LDLR-214ENST00000560628 AKR1C3P42330 323 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 WFDC2Q14508 124 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 Q5VSD8 79 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 KCNRGQ8N5I3 272 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 FRZBQ92765 325 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 SFRP2Q96HF1 295 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 TM2D2Q9BX73 214 aa6.8□□□□□ -1.32
LDLR-214ENST00000560628 A0A087WWC5 75 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 TRBV6-1A0A0K0K1D8 114 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 RHODO00212 210 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 RPL19P84098 196 aaKnown RBP6.79□□□□□ -1.32
LDLR-214ENST00000560628 LINC01559Q495D7 138 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 NTN5Q8WTR8 489 aaPredicted RBP6.79□□□□□ -1.32
LDLR-214ENST00000560628 MBD3L1Q8WWY6 194 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 FAM30AQ9NZY2 134 aa6.79□□□□□ -1.32
LDLR-214ENST00000560628 TRAV8-3A0A0A6YYJ7 113 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 MUC21A0A0G2JKD1 596 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 MUC21A0A140T8X8 626 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 SCO2A0A1W2PP80 73 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 SEC11BP0C7V7 166 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 SSTP61278 116 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 LAGE3Q14657 143 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 BAGE2Q86Y30 109 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 ZFP82Q8N141 532 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 BAALCQ8WXS3 180 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 DNAJC30Q96LL9 226 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 TCEAL7Q9BRU2 100 aa6.78□□□□□ -1.32
LDLR-214ENST00000560628 ZNF471Q9BX82 626 aaPredicted RBP6.78□□□□□ -1.32
LDLR-214ENST00000560628 A0A0D9SG52 128 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 UMAD1C9J7I0 102 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 NIT1Q86X76 327 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 TMEM70Q9BUB7 260 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 KLK12Q9UKR0 248 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 URGCP-MRPS24S4R325 110 aa6.77□□□□□ -1.33
LDLR-214ENST00000560628 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.76□□□□□ -1.33
LDLR-214ENST00000560628 KANTRA0A1W2PQU2 76 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 HMSDA8MTL9 139 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 FAM229AH3BQW9 127 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 BCL2L11O43521 198 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 PFDN1O60925 122 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 S100A9P06702 114 aaKnown RBP6.76□□□□□ -1.33
LDLR-214ENST00000560628 H2AFB1P0C5Y9 115 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 RPL36AP83881 106 aaKnown RBP6.76□□□□□ -1.33
LDLR-214ENST00000560628 ZNF345Q14585 488 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 TOR2AQ5JU69 321 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 PRR27Q6MZM9 219 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 TMUB2Q71RG4 321 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 OR10AG1Q8NH19 301 aa6.76□□□□□ -1.33
LDLR-214ENST00000560628 RPL36ALQ969Q0 106 aaKnown RBP6.76□□□□□ -1.33
LDLR-214ENST00000560628 TRBV7-3A0A075B6L6 115 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 IGKV2D-24A0A075B6R9 120 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 A0A087WX48 190 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 TRBV10-1A0A0K0K1A3 114 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 TMEM262E9PQX1 116 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 UBE2D3P61077 147 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 UBE2D2P62837 147 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 CCL20P78556 96 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 LINC01620Q4KN68 170 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 UBE2WQ96B02 151 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 MLST8Q9BVC4 326 aa6.75□□□□□ -1.33
LDLR-214ENST00000560628 F5H697 171 aa6.74□□□□□ -1.33
LDLR-214ENST00000560628 RAB4BP61018 213 aa6.74□□□□□ -1.33
LDLR-214ENST00000560628 ZNF56Q15929 161 aa6.74□□□□□ -1.33
LDLR-214ENST00000560628 RMI2Q96E14 147 aa6.74□□□□□ -1.33
LDLR-214ENST00000560628 GNG13Q9P2W3 67 aa6.74□□□□□ -1.33
LDLR-214ENST00000560628 RBFOX3A6NFN3 312 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 RPL35P42766 123 aaKnown RBP6.73□□□□□ -1.33
LDLR-214ENST00000560628 EIF5AP63241 154 aaKnown RBP6.73□□□□□ -1.33
LDLR-214ENST00000560628 SPANXN1Q5VSR9 72 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 KCNIP4Q6PIL6 250 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 NEXN-AS1Q8NBZ9 246 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 DERL1Q9BUN8 251 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 SSBP4Q9BWG4 385 aaPredicted RBP6.73□□□□□ -1.33
LDLR-214ENST00000560628 COX11Q9Y6N1 276 aa6.73□□□□□ -1.33
LDLR-214ENST00000560628 TRBV6-8A0A0A6YYG3 113 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 SNAI2O43623 268 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 C1QBP02746 253 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 CXCL1P09341 107 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 GZMBP10144 247 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 ELOBQ15370 118 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 C15orf54Q8N8G6 183 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 Q8N976 141 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 OR10G8Q8NGN5 311 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 FAT1Q14517 4588 aa6.72□□□□□ -1.33
LDLR-214ENST00000560628 RAB19A4D1S5 217 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 OR5AL1P0C617 328 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 ENHOQ6UWT2 76 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 CHCHD5Q9BSY4 110 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 CHCHD7Q9BUK0 85 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 TPPP3Q9BW30 176 aa6.71□□□□□ -1.34
LDLR-214ENST00000560628 FLG2Q5D862 2391 aaPredicted RBP6.71□□□□□ -1.34
LDLR-214ENST00000560628 SMIM17P0DL12 118 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 Q0VG73 95 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 MPV17L2Q567V2 206 aa6.7□□□□□ -1.34
LDLR-214ENST00000560628 CENPWQ5EE01 88 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 171.7 ms