RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 CDPF1Q6NVV7 123 aa11.81□□□□□ -0.52
HDDC3-205ENST00000559898 DAZ4Q86SG3 579 aaKnown RBP11.81□□□□□ -0.52
HDDC3-205ENST00000559898 ZNF471Q9BX82 626 aaPredicted RBP11.81□□□□□ -0.52
HDDC3-205ENST00000559898 DAZ3Q9NR90 486 aaKnown RBP11.81□□□□□ -0.52
HDDC3-205ENST00000559898 BCL2L11O43521 198 aa11.8□□□□□ -0.52
HDDC3-205ENST00000559898 SEC11BP0C7V7 166 aa11.8□□□□□ -0.52
HDDC3-205ENST00000559898 CCL20P78556 96 aa11.8□□□□□ -0.52
HDDC3-205ENST00000559898 PIK3CD-AS1Q5SR53 167 aa11.8□□□□□ -0.52
HDDC3-205ENST00000559898 SFRP2Q96HF1 295 aa11.8□□□□□ -0.52
HDDC3-205ENST00000559898 MUC21A0A0G2JKD1 596 aa11.79□□□□□ -0.52
HDDC3-205ENST00000559898 MUC21A0A140T8X8 626 aa11.79□□□□□ -0.52
HDDC3-205ENST00000559898 HMSDA8MTL9 139 aa11.79□□□□□ -0.52
HDDC3-205ENST00000559898 PSCAO43653 123 aa11.79□□□□□ -0.52
HDDC3-205ENST00000559898 SMR3BP02814 79 aaPredicted RBP11.79□□□□□ -0.52
HDDC3-205ENST00000559898 GCSHP23434 173 aa11.78□□□□□ -0.52
HDDC3-205ENST00000559898 STOML3Q8TAV4 291 aa11.78□□□□□ -0.52
HDDC3-205ENST00000559898 PHLDA3Q9Y5J5 127 aa11.78□□□□□ -0.52
HDDC3-205ENST00000559898 LECT2O14960 151 aa11.77□□□□□ -0.53
HDDC3-205ENST00000559898 TMUB2Q71RG4 321 aa11.77□□□□□ -0.53
HDDC3-205ENST00000559898 Q8N814 137 aa11.77□□□□□ -0.53
HDDC3-205ENST00000559898 MLST8Q9BVC4 326 aa11.77□□□□□ -0.53
HDDC3-205ENST00000559898 FAM30AQ9NZY2 134 aa11.77□□□□□ -0.53
HDDC3-205ENST00000559898 IGLV5-52A0A0A0MRZ9 124 aa11.76□□□□□ -0.53
HDDC3-205ENST00000559898 A0A0D9SG52 128 aa11.76□□□□□ -0.53
HDDC3-205ENST00000559898 TPT1P13693 172 aaKnown RBP11.76□□□□□ -0.53
HDDC3-205ENST00000559898 SYT8Q8NBV8 401 aa11.76□□□□□ -0.53
HDDC3-205ENST00000559898 OR10AG1Q8NH19 301 aa11.76□□□□□ -0.53
HDDC3-205ENST00000559898 DERL1Q9BUN8 251 aa11.76□□□□□ -0.53
HDDC3-205ENST00000559898 KANTRA0A1W2PQU2 76 aa11.75□□□□□ -0.53
HDDC3-205ENST00000559898 EPM2AB3EWF7 344 aa11.75□□□□□ -0.53
HDDC3-205ENST00000559898 SSTP61278 116 aa11.75□□□□□ -0.53
HDDC3-205ENST00000559898 UMAD1C9J7I0 102 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 RHODO00212 210 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 H2AFB1P0C5Y9 115 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 Q5VSD8 79 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 PRR27Q6MZM9 219 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 BAGE2Q86Y30 109 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 TCEAL7Q9BRU2 100 aa11.74□□□□□ -0.53
HDDC3-205ENST00000559898 ZFP82Q8N141 532 aa11.73□□□□□ -0.53
HDDC3-205ENST00000559898 UBE2D3P61077 147 aa11.72□□□□□ -0.53
HDDC3-205ENST00000559898 UBE2D2P62837 147 aa11.72□□□□□ -0.53
HDDC3-205ENST00000559898 LAGE3Q14657 143 aa11.72□□□□□ -0.53
HDDC3-205ENST00000559898 NIT1Q86X76 327 aa11.72□□□□□ -0.53
HDDC3-205ENST00000559898 IGLV2-8P01709 118 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 GZMBP10144 247 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 RPL35P42766 123 aaKnown RBP11.71□□□□□ -0.53
HDDC3-205ENST00000559898 LINC01620Q4KN68 170 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 NEXN-AS1Q8NBZ9 246 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 BAALCQ8WXS3 180 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 GNG13Q9P2W3 67 aa11.71□□□□□ -0.53
HDDC3-205ENST00000559898 SNAI2O43623 268 aa11.7□□□□□ -0.54
HDDC3-205ENST00000559898 PFDN1O60925 122 aa11.7□□□□□ -0.54
HDDC3-205ENST00000559898 SSBP4Q9BWG4 385 aaPredicted RBP11.7□□□□□ -0.54
HDDC3-205ENST00000559898 KLK12Q9UKR0 248 aa11.7□□□□□ -0.54
HDDC3-205ENST00000559898 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.69□□□□□ -0.54
HDDC3-205ENST00000559898 RAB19A4D1S5 217 aa11.69□□□□□ -0.54
HDDC3-205ENST00000559898 RBFOX3A6NFN3 312 aa11.69□□□□□ -0.54
HDDC3-205ENST00000559898 S100A9P06702 114 aaKnown RBP11.68□□□□□ -0.54
HDDC3-205ENST00000559898 INAFM2P0DMQ5 153 aa11.68□□□□□ -0.54
HDDC3-205ENST00000559898 ZNF56Q15929 161 aa11.68□□□□□ -0.54
HDDC3-205ENST00000559898 NTN5Q8WTR8 489 aaPredicted RBP11.68□□□□□ -0.54
HDDC3-205ENST00000559898 KIF25-AS1Q9Y6Z4 181 aa11.68□□□□□ -0.54
HDDC3-205ENST00000559898 TRBV7-3A0A075B6L6 115 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 A0A087WWC5 75 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 CXCL1P09341 107 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 CENPWQ5EE01 88 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 OR10G8Q8NGN5 311 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 C11orf52Q96A22 123 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 TM2D2Q9BX73 214 aa11.67□□□□□ -0.54
HDDC3-205ENST00000559898 HERC1Q15751 4861 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 TRAV8-3A0A0A6YYJ7 113 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 TRBV10-1A0A0K0K1A3 114 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 C1QBP02746 253 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 OR5AL1P0C617 328 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 RAB4BP61018 213 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 RPL36AP83881 106 aaKnown RBP11.66□□□□□ -0.54
HDDC3-205ENST00000559898 NTM-AS1Q6ZSK4 140 aa11.66□□□□□ -0.54
HDDC3-205ENST00000559898 RPL36ALQ969Q0 106 aaKnown RBP11.66□□□□□ -0.54
HDDC3-205ENST00000559898 SRRM2Q9UQ35 2752 aaKnown RBP11.65□□□□□ -0.54
HDDC3-205ENST00000559898 TRBV20OR9-2A0A075B6H5 130 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 IGKV2D-24A0A075B6R9 120 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 TRAV1-1A0A0B4J248 108 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 SPANXN1Q5VSR9 72 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 UBE2WQ96B02 151 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 TMEM70Q9BUB7 260 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 BOLA1Q9Y3E2 137 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 MYCBP2O75592 4640 aa11.65□□□□□ -0.54
HDDC3-205ENST00000559898 SULT1A2P50226 295 aa11.64□□□□□ -0.55
HDDC3-205ENST00000559898 MPV17L2Q567V2 206 aa11.64□□□□□ -0.55
HDDC3-205ENST00000559898 ENHOQ6UWT2 76 aa11.64□□□□□ -0.55
HDDC3-205ENST00000559898 FRZBQ92765 325 aa11.64□□□□□ -0.55
HDDC3-205ENST00000559898 MANBALQ9NQG1 85 aa11.64□□□□□ -0.55
HDDC3-205ENST00000559898 TRBV6-8A0A0A6YYG3 113 aa11.63□□□□□ -0.55
HDDC3-205ENST00000559898 C19orf71A6NCJ1 209 aa11.63□□□□□ -0.55
HDDC3-205ENST00000559898 IGLC6P0CF74 106 aa11.63□□□□□ -0.55
HDDC3-205ENST00000559898 EIF5AP63241 154 aaKnown RBP11.63□□□□□ -0.55
HDDC3-205ENST00000559898 URGCP-MRPS24S4R325 110 aa11.63□□□□□ -0.55
HDDC3-205ENST00000559898 F5H697 171 aa11.62□□□□□ -0.55
HDDC3-205ENST00000559898 C15orf54Q8N8G6 183 aa11.62□□□□□ -0.55
HDDC3-205ENST00000559898 Q8N976 141 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms