RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PAPPA-AS1Q5QFB9 102 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 C2orf66Q6UXQ4 117 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 GTF2H5Q6ZYL4 71 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 PCP2Q8IVA1 136 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 RPL39LQ96EH5 51 aaKnown RBP5.43□□□□□ -1.54
VPS13C-206ENST00000558338 C9orf85Q96MD7 179 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 CSTL1Q9H114 145 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 CYSLTR1Q9Y271 337 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 KIF25-AS1Q9Y6Z4 181 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 DOPEY1Q5JWR5 2465 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 PKD1L2Q7Z442 2459 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.43□□□□□ -1.548e-9■■■■■ 34.1
VPS13C-206ENST00000558338 CACNA1AO00555 2505 aa5.43□□□□□ -1.54
VPS13C-206ENST00000558338 CHD8Q9HCK8 2581 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 IGHV1OR15-1A0A075B7D0 117 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 TRAV12-3A0A0B4J271 114 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 TRBV6-5A0A0K0K1A5 114 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 A0A0U1RRA0 63 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 LINC01619G3V211 115 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 H3BS24 57 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 K7EP13 123 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 HOXD3P31249 432 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-206ENST00000558338 SYNJ2BPP57105 145 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 Q6ZVH6 145 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 Q8N2B8 174 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 NEXN-AS1Q8NBZ9 246 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 KIR2DL4Q99706 377 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 SPAG8Q99932 426 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-206ENST00000558338 CHAC1Q9BUX1 264 aa5.42□□□□□ -1.54
VPS13C-206ENST00000558338 IGHV3-16A0A0C4DH30 117 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 VCYO14598 125 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 HOXA3O43365 443 aaPredicted RBP5.41□□□□□ -1.54
VPS13C-206ENST00000558338 HIST2H2BCQ6DN03 193 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 HIST2H2BDQ6DRA6 164 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 SUMO4Q6EEV6 95 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 GTSCR1Q86UQ5 136 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 ZNF843Q8N446 348 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 TMEM86BQ8N661 226 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 TMEM141Q96I45 108 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 AKAP6Q13023 2319 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 IGKV2D-26A0A0A0MRZ7 120 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 OR11H12B2RN74 326 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 SMIM13P0DJ93 91 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 TCTAP57738 103 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 LINC00315P59091 139 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 AMMECR1LQ6DCA0 310 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 C10orf99Q6UWK7 81 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 OR11H1Q8NG94 326 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 OR11H2Q8NH07 326 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 BAALCQ8WXS3 180 aa5.41□□□□□ -1.54
VPS13C-206ENST00000558338 TRBV25-1A0A075B6N4 114 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 F5H697 171 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 GCSHP23434 173 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 POLR2KP53803 58 aaKnown RBP5.4□□□□□ -1.55
VPS13C-206ENST00000558338 RIPPLY3P57055 190 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 HERVK_113P61574 105 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 RHOHQ15669 191 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 TCTEX1D4Q5JR98 221 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 TRPT1Q86TN4 253 aaKnown RBP5.4□□□□□ -1.55
VPS13C-206ENST00000558338 C4orf3Q8WVX3 66 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 TIMM17AQ99595 171 aa5.4□□□□□ -1.55
VPS13C-206ENST00000558338 TRAV8-6A0A0B4J262 113 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 TRBV27A0A0K0K1C4 114 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 A8MTW9 85 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 PRB1P04280 392 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 VPREB1P12018 145 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 ZNF56Q15929 161 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 SPINK13Q1W4C9 94 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 ZFP2Q6ZN57 461 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 CEND1Q8N111 149 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 MAPK1IP1LQ8NDC0 245 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 OR5A1Q8NGJ0 315 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 DUX5Q96PT3 197 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 FAM110AQ9BQ89 295 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 TM2D2Q9BX73 214 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 ZNF256Q9Y2P7 627 aaPredicted RBP5.39□□□□□ -1.55
VPS13C-206ENST00000558338 CR1P17927 2039 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 TRAV25A0A0B4J276 109 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 MYMXA0A1B0GTQ4 84 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 SDHAF1A6NFY7 115 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 E9PLD3 99 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 K7EP34 96 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 SPRY2O43597 315 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 PMVKQ15126 192 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 NSUN5P1Q3KNT7 163 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 PIK3CD-AS1Q5SR53 167 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 KRTAP5-3Q6L8H2 238 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 AMTNQ6UX39 209 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 WFDC12Q8WWY7 111 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 Q96MF0 132 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 GEMIN7Q9H840 131 aaKnown RBP5.39□□□□□ -1.55
VPS13C-206ENST00000558338 EDA2RQ9HAV5 297 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 TP53TG1Q9Y2A0 90 aa5.39□□□□□ -1.55
VPS13C-206ENST00000558338 PRRC2AP48634 2157 aaKnown RBP5.39□□□□□ -1.55
VPS13C-206ENST00000558338 CSMD1Q96PZ7 3565 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 TRAV12-2A0A075B6T6 113 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 A0A1W2PPM0 123 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 H3BUT2 72 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 IGKV3-20P01619 116 aa5.38□□□□□ -1.55
VPS13C-206ENST00000558338 FABP2P12104 132 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms