RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NDUFA11Q86Y39 141 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 ABCA4P78363 2273 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 TSHBP01222 138 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 IGHV1-69P01742 117 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 MTURNQ8N3F0 131 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 SLC25A29Q8N8R3 303 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 BPESC1Q9GZL8 116 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 TRBV27A0A0K0K1C4 114 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 C19orf84I3L1E1 186 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 TMEM219Q86XT9 240 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 PPDPFLQ8WWR9 84 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 ODF3Q96PU9 254 aa12.23□□□□□ -0.45
SHMT2-232ENST00000557487 K7EMT4 169 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 LGALS9O00182 355 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 IGHG2P01859 326 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 PSMB2P49721 201 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 ZNF876PQ49A33 203 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 SBSPONQ8IVN8 264 aa12.22□□□□□ -0.45
SHMT2-232ENST00000557487 USP9YO00507 2555 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-232ENST00000557487 LOC107984156A0A0G2JMH3 177 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 M0QXV9 152 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 SMCPP49901 116 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-232ENST00000557487 RPL11P62913 178 aaKnown RBP12.21□□□□□ -0.45
SHMT2-232ENST00000557487 RHOHQ15669 191 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 SUMO4Q6EEV6 95 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 ARL17AQ8IVW1 177 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 RHPN1-AS1Q9BWJ2 59 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 UBTD1Q9HAC8 227 aa12.21□□□□□ -0.45
SHMT2-232ENST00000557487 DAZ1Q9NQZ3 744 aaKnown RBP12.21□□□□□ -0.45
SHMT2-232ENST00000557487 A0A1W2PPR1 153 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 TRBV12-3P01733 135 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 IGHV3-30P01768 117 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 IGHV3-30-5P0DP03 117 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 NFE4Q86UQ8 179 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 TEN1Q86WV5 123 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 C10orf126Q8N4M7 172 aa12.21□□□□□ -0.46
SHMT2-232ENST00000557487 ADGRG4Q8IZF6 3080 aa12.2□□□□□ -0.46
SHMT2-232ENST00000557487 KLHL30-AS1Q8NEE0 82 aa12.2□□□□□ -0.46
SHMT2-232ENST00000557487 SDHAF1A6NFY7 115 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 INSL3P51460 131 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 SYT8Q8NBV8 401 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 SPRY2O43597 315 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 NSUN5P1Q3KNT7 163 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 HIST2H2BCQ6DN03 193 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 LINC00527Q9UJ94 153 aa12.19□□□□□ -0.46
SHMT2-232ENST00000557487 F6UB75 175 aa12.18□□□□□ -0.46
SHMT2-232ENST00000557487 LGALS3P17931 250 aaKnown RBP12.18□□□□□ -0.46
SHMT2-232ENST00000557487 TMEM170BQ5T4T1 132 aa12.18□□□□□ -0.46
SHMT2-232ENST00000557487 PRO1854Q9UHT4 67 aa12.18□□□□□ -0.46
SHMT2-232ENST00000557487 ZNF580Q9UK33 172 aa12.18□□□□□ -0.46
SHMT2-232ENST00000557487 PTPN13Q12923 2485 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 A8MWV9 139 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 J3QQQ9 107 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 CFC1BP0CG36 223 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 CFC1P0CG37 223 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 C9orf85Q96MD7 179 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 CDIP1Q9H305 208 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 F5H697 171 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 LEPROTO15243 131 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 CRYBA4P53673 196 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 CKS1BP61024 79 aa12.17□□□□□ -0.46
SHMT2-232ENST00000557487 SPTBN1Q01082 2364 aaKnown RBP12.16□□□□□ -0.46
SHMT2-232ENST00000557487 A6NDX4 124 aa12.16□□□□□ -0.46
SHMT2-232ENST00000557487 IGLV1-40P01703 118 aa12.16□□□□□ -0.46
SHMT2-232ENST00000557487 PF4V1P10720 104 aa12.16□□□□□ -0.46
SHMT2-232ENST00000557487 SPTAN1Q13813 2472 aaKnown RBP12.16□□□□□ -0.46
SHMT2-232ENST00000557487 ZNF418Q8TF45 676 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-232ENST00000557487 AMELXQ99217 191 aa12.16□□□□□ -0.46
SHMT2-232ENST00000557487 A0A0J9YX75 114 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 TMEM262E9PQX1 116 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 TCL1BO95988 128 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 DEFB1P60022 68 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 TRPT1Q86TN4 253 aaKnown RBP12.15□□□□□ -0.46
SHMT2-232ENST00000557487 ASH1LQ9NR48 2969 aaKnown RBP12.15□□□□□ -0.46
SHMT2-232ENST00000557487 A0A0B4J2C4 111 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 RPL39P62891 51 aaKnown RBP12.15□□□□□ -0.46
SHMT2-232ENST00000557487 ZNRF2Q8NHG8 242 aa12.15□□□□□ -0.46
SHMT2-232ENST00000557487 IGHV3-16A0A0C4DH30 117 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 IGHV3-11P01762 117 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 TSPEAR-AS2P59090 65 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 CLEC2AQ6UVW9 174 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 DCANP1Q8TF63 244 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 MDFICQ9P1T7 246 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 COL12A1Q99715 3063 aa12.14□□□□□ -0.47
SHMT2-232ENST00000557487 TMEM223A0PJW6 202 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 A0A087WWL8 130 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-232ENST00000557487 M0QY20 66 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 SPINK8P0C7L1 97 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 SCGB1C2P0DMR2 95 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 P0DMU3 169 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 FAM231AP0DMU4 169 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 FAM231CP0DMU5 169 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 Q6ZS46 218 aa12.13□□□□□ -0.47
SHMT2-232ENST00000557487 HECTD1Q9ULT8 2610 aa12.12□□□□□ -0.47
SHMT2-232ENST00000557487 ZNF688P0C7X2 276 aa12.12□□□□□ -0.47
SHMT2-232ENST00000557487 Q6ZUT4 128 aa12.12□□□□□ -0.47
SHMT2-232ENST00000557487 EMP1P54849 157 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 CFHR3Q02985 330 aa12.11□□□□□ -0.47
SHMT2-232ENST00000557487 CARD19Q96LW7 228 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms