RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 DMRTA1Q5VZB9 504 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 DAZ4Q86SG3 579 aaKnown RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 Q86TA4 180 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 SLC7A5P1Q8MH63 180 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 C14orf178Q8N769 122 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 SYT8Q8NBV8 401 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 HIST1H2BAQ96A08 127 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 FAM210AQ96ND0 272 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 ZNF471Q9BX82 626 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 SAMD10Q9BYL1 202 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 NKX6-2Q9C056 277 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 DAZ3Q9NR90 486 aaKnown RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 FAM30AQ9NZY2 134 aa7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 FLG2Q5D862 2391 aaPredicted RBP7.35□□□□□ -1.23
CCDC88C-213ENST00000557455 FAM74A7A6NL05 159 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 M0R036 132 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 RHODO00212 210 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 LECT2O14960 151 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 EIF5AP63241 154 aaKnown RBP7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 WFDC2Q14508 124 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 CLLU1Q5K131 121 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 AKR1C8PQ5T2L2 129 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 UFSP1Q6NVU6 142 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 ZC2HC1AQ96GY0 325 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 Q9UF83 564 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 ZFP30Q9Y2G7 519 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 URGCP-MRPS24S4R325 110 aa7.34□□□□□ -1.23
CCDC88C-213ENST00000557455 KRBOX1C9JBD0 128 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 SH2D1AO60880 128 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 ARMS2P0C7Q2 107 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 TPT1P13693 172 aaKnown RBP7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 CRIP1P50238 77 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 DNLZQ5SXM8 178 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 FAM162BQ5T6X4 162 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 FAM74A4Q5TZK3 123 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 STOML3Q8TAV4 291 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 PHLDA3Q9Y5J5 127 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 COX11Q9Y6N1 276 aa7.33□□□□□ -1.24
CCDC88C-213ENST00000557455 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 GRIFINA4D1Z8 144 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 LINC00862A6NCI5 91 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 SEC11BP0C7V7 166 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 UBE2G1P62253 170 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 ALKAL2Q6UX46 152 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 RMI2Q96E14 147 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 SFRP2Q96HF1 295 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 FMC1Q96HJ9 113 aa7.32□□□□□ -1.24
CCDC88C-213ENST00000557455 A0A087WWL8 130 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 TMSB15BA0A087X1C1 80 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 MAP1LC3B2A6NCE7 125 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 M0R381 172 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 PLA2G1BP04054 148 aaKnown RBP7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 EIF5AL1Q6IS14 154 aaKnown RBP7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 COX8CQ7Z4L0 72 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 NIT1Q86X76 327 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 BAALCQ8WXS3 180 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 MAP1LC3BQ9GZQ8 125 aa7.31□□□□□ -1.24
CCDC88C-213ENST00000557455 IGKV2D-24A0A075B6R9 120 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 A0A087WX48 190 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 ZNF674Q2M3X9 581 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 LINC01559Q495D7 138 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 CST9LP1Q5W188 147 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 KCNIP4Q6PIL6 250 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 Q6ZSA8 131 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 ZFP82Q8N141 532 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 Q8N976 141 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 TCEAL7Q9BRU2 100 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 KLK12Q9UKR0 248 aa7.3□□□□□ -1.24
CCDC88C-213ENST00000557455 TRBV6-1A0A0K0K1D8 114 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 RBFOX3A6NFN3 312 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 J3QL48 77 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 LTAP01374 205 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 FHITP49789 147 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 RPL36AP83881 106 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 ELOBQ15370 118 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 COMMD7Q86VX2 200 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 LINC00528Q8N1L1 170 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 RPL36ALQ969Q0 106 aaKnown RBP7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 DNAJC30Q96LL9 226 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 CHCHD7Q9BUK0 85 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 MED9Q9NWA0 146 aa7.29□□□□□ -1.24
CCDC88C-213ENST00000557455 TRBV7-3A0A075B6L6 115 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 TRBV10-1A0A0K0K1A3 114 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 AKR1C3P42330 323 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 UBE2D3P61077 147 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 UBE2D2P62837 147 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 LINC01620Q4KN68 170 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 UBE2WQ96B02 151 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 CYTL1Q9NRR1 136 aa7.28□□□□□ -1.24
CCDC88C-213ENST00000557455 TMEM262E9PQX1 116 aa7.27□□□□□ -1.25
CCDC88C-213ENST00000557455 Q0VG73 95 aa7.27□□□□□ -1.25
CCDC88C-213ENST00000557455 LCE2DQ5TA82 110 aaPredicted RBP7.27□□□□□ -1.25
CCDC88C-213ENST00000557455 PAGE4O60829 102 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 S100A9P06702 114 aaKnown RBP7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 RAB4BP61018 213 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 ZNF56Q15929 161 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 ATRAIDQ6UW56 229 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 SCXQ7RTU7 201 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 OR10G8Q8NGN5 311 aa7.26□□□□□ -1.25
CCDC88C-213ENST00000557455 DEFB104AQ8WTQ1 72 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms