RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SNAI2O43623 268 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 DPM2O94777 84 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 CKS2P33552 79 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 SLURP1P55000 103 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 MRPL51Q4U2R6 128 aaKnown RBP9.48□□□□□ -0.89
SHMT2-229ENST00000557348 DYNLRB2Q8TF09 96 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 F8P00451 2351 aa9.48□□□□□ -0.89
SHMT2-229ENST00000557348 IGKV3D-20A0A0C4DH25 116 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 A0A0J9YX75 114 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 KLLNB2CW77 178 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 K7EMI3 77 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 NMUP48645 174 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 FHL3Q13643 280 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 WFDC3Q8IUB2 231 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 LINC01006Q8NI28 216 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 HHLA3Q9XRX5 114 aa9.47□□□□□ -0.89
SHMT2-229ENST00000557348 IGHV4-4A0A075B6R2 117 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 ZNF688P0C7X2 276 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 ASIPP42127 132 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 ODF1Q14990 250 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 DEFB136Q30KP8 78 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 CELSR1Q9NYQ6 3014 aa9.46□□□□□ -0.89
SHMT2-229ENST00000557348 FLNAP21333 2647 aaKnown RBP9.46□□□□□ -0.89
SHMT2-229ENST00000557348 TRBV25-1A0A075B6N4 114 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 LINC01549A6NIU2 74 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 IGLL5B9A064 214 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 LY6G6DO95868 133 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 GCSHP23434 173 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 PLNP26678 52 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 RAB37Q96AX2 223 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 ZNF479Q96JC4 524 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 SPAG8Q99932 426 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-229ENST00000557348 MRPL16Q9NX20 251 aaKnown RBP9.45□□□□□ -0.9
SHMT2-229ENST00000557348 TEP1Q99973 2627 aaKnown RBP9.45□□□□□ -0.9
SHMT2-229ENST00000557348 A6NJY4 79 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 CCL24O00175 119 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 EDN2P20800 178 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 GAGE13Q4V321 117 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 C18orf65Q6ZTR6 163 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 PCP2Q8IVA1 136 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 DLX4Q92988 240 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-229ENST00000557348 C11orf21Q9P2W6 132 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 VPS13CQ709C8 3753 aa9.45□□□□□ -0.9
SHMT2-229ENST00000557348 F6UB75 175 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 H3BMG7 143 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 S100A4P26447 101 aaKnown RBP9.44□□□□□ -0.9
SHMT2-229ENST00000557348 RNASE4P34096 147 aaKnown RBP9.44□□□□□ -0.9
SHMT2-229ENST00000557348 TCTAP57738 103 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 PRR9Q5T870 116 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 SPANXN1Q5VSR9 72 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 Q8N8P6 123 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 MCRIP2Q9BUT9 160 aaKnown RBP9.44□□□□□ -0.9
SHMT2-229ENST00000557348 CYSLTR1Q9Y271 337 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 ZANQ9Y493 2812 aa9.44□□□□□ -0.9
SHMT2-229ENST00000557348 HIVEP1P15822 2718 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 MAP1AP78559 2803 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-229ENST00000557348 TRAV12-1A0A0B4J245 112 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 FXYD2P54710 66 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 CMC4P56277 68 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-229ENST00000557348 RRN3P1Q2M238 152 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 FAM159AQ6UWV7 190 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 ZNF575Q86XF7 245 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 RAX2Q96IS3 184 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 SVEP1Q4LDE5 3571 aa9.43□□□□□ -0.9
SHMT2-229ENST00000557348 CD28P10747 220 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 CKS1BP61024 79 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 DEFB114Q30KQ6 69 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 AMN1Q8IY45 258 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 GTSF1LQ9H1H1 148 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 M0QXV9 152 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 PRSS1P07477 247 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 SMAGPQ0VAQ4 97 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 C12orf74Q32Q52 190 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 TMEM158Q8WZ71 300 aa9.42□□□□□ -0.9
SHMT2-229ENST00000557348 CITED2Q99967 270 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-229ENST00000557348 TIMM8BQ9Y5J9 83 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-229ENST00000557348 LOC389332A0A1B0GUA5 103 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 A8MTW9 85 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 OR11H12B2RN74 326 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-229ENST00000557348 H3BVH4 76 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 NPYP01303 97 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 ANXA2RQ3ZCQ2 193 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 TMEM61Q8N0U2 210 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 OR11H2Q8NH07 326 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 CLUHP3Q96NS8 147 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 NHP2Q9NX24 153 aaKnown RBP9.41□□□□□ -0.9
SHMT2-229ENST00000557348 PHLDA3Q9Y5J5 127 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 TLN2Q9Y4G6 2542 aa9.41□□□□□ -0.9
SHMT2-229ENST00000557348 A0A087WX48 190 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 TMEM262E9PQX1 116 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 J3KRW8 73 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 PROK1P58294 105 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 DKK2Q9UBU2 259 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 PRO0461Q9UI25 63 aa9.4□□□□□ -0.9
SHMT2-229ENST00000557348 NDUFA11Q86Y39 141 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 C1QTNF4Q9BXJ3 329 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 HIVEP2P31629 2446 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 TRBV20-1A0A075B6N2 111 aa9.39□□□□□ -0.91
SHMT2-229ENST00000557348 NXPH4O95158 308 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms