RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 Q71RC1 249 aaPredicted RBP3.3□□□□□ -1.88
SRP54-212ENST00000556992 ORMDL3Q8N138 153 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 KLHL30-AS1Q8NEE0 82 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 DYNLRB2Q8TF09 96 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 DLX4Q92988 240 aaPredicted RBP3.3□□□□□ -1.88
SRP54-212ENST00000556992 URB1-AS1Q96HZ7 61 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 ESM1Q9NQ30 184 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 GSN-AS1Q9NRJ2 163 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 SIGLEC8Q9NYZ4 499 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 LAMTOR2Q9Y2Q5 125 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 DOCK11Q5JSL3 2073 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 ABCA1O95477 2261 aa3.3□□□□□ -1.88
SRP54-212ENST00000556992 ZANQ9Y493 2812 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 ARHGAP32A7KAX9 2087 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 NOTCH3Q9UM47 2321 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 MUC21A0A0G2JKD1 596 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 MUC21A0A140T8X8 626 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 A0A1B0GUS0 222 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 C7orf71A4D174 169 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 F6UB75 175 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 M0R2Z0 102 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 RHODO00212 210 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 SNAI2O43623 268 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 TCF21O43680 179 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 PPP1R17O96001 155 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 ZNF688P0C7X2 276 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 CD28P10747 220 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 PKIAP61925 76 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 TDRG1Q3Y452 100 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 ANXA2RQ3ZCQ2 193 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 MRPL51Q4U2R6 128 aaKnown RBP3.29□□□□□ -1.88
SRP54-212ENST00000556992 MUC21Q5SSG8 566 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 RNASEKQ6P5S7 137 aaKnown RBP3.29□□□□□ -1.88
SRP54-212ENST00000556992 ADAMTSL5Q6ZMM2 481 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 FA2HQ7L5A8 372 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 PRELID3AQ96N28 172 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 RCHY1Q96PM5 261 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 SPAG8Q99932 426 aaPredicted RBP3.29□□□□□ -1.88
SRP54-212ENST00000556992 MAP6D1Q9H9H5 199 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 NAGKQ9UJ70 344 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 PHLDA3Q9Y5J5 127 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 TGP01266 2768 aa3.29□□□□□ -1.88
SRP54-212ENST00000556992 TET2Q6N021 2002 aaPredicted RBP3.29□□□□□ -1.88
SRP54-212ENST00000556992 WNK2Q9Y3S1 2297 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 FLNAP21333 2647 aaKnown RBP3.28□□□□□ -1.88
SRP54-212ENST00000556992 NOTCH1P46531 2555 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 SVEP1Q4LDE5 3571 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 D6R8Y8 96 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 TSTD3H0UI37 97 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 J3KRW8 73 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 GNRH2O43555 120 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 EDN2P20800 178 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 CDKN1BP46527 198 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 KRTDAPP60985 99 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 PMCHL1Q16048 86 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 DEFB136Q30KP8 78 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 PRR9Q5T870 116 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 AMN1Q8IY45 258 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 FAM19A2Q8N3H0 131 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 DEFB125Q8N687 156 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 MRAP2Q96G30 205 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 CITED2Q99967 270 aaPredicted RBP3.28□□□□□ -1.88
SRP54-212ENST00000556992 NXT2Q9NPJ8 142 aaKnown RBP3.28□□□□□ -1.88
SRP54-212ENST00000556992 SCRT2Q9NQ03 307 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 HSPB8Q9UJY1 196 aa3.28□□□□□ -1.88
SRP54-212ENST00000556992 TIMM8BQ9Y5J9 83 aaPredicted RBP3.28□□□□□ -1.88
SRP54-212ENST00000556992 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.28□□□□□ -1.889e-9■■■■■ 32.9
SRP54-212ENST00000556992 PRKDCP78527 4128 aaKnown RBP3.27□□□□□ -1.89
SRP54-212ENST00000556992 IGHV1OR15-1A0A075B7D0 117 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 TRAV12-3A0A0B4J271 114 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 LOC389332A0A1B0GUA5 103 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 A0A1B0GUV1 79 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 C20orf202A1L168 122 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 H3BMM0 161 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 H3BVH4 76 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 LEPROTL1O95214 131 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 TNFRSF6BO95407 300 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 SMIM17P0DL12 118 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 HLA-DRB4P13762 266 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 EVI2AP22794 236 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 IFI27P40305 119 aaPredicted RBP3.27□□□□□ -1.89
SRP54-212ENST00000556992 DEFB131AP59861 70 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 DEFB1P60022 68 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 PET117Q6UWS5 81 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 AMTNQ6UX39 209 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 SPATA12Q7Z6I5 190 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 NDUFA11Q86Y39 141 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 TMEM61Q8N0U2 210 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 OR2K2Q8NGT1 345 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 OR10AG1Q8NH19 301 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 RNF185Q96GF1 192 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 DUX3Q96PT4 197 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 SMR3AQ99954 134 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 C20orf78Q9BR46 151 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 TMEM70Q9BUB7 260 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 MAP1LC3CQ9BXW4 147 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 MAP1LC3AQ9H492 121 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 SELENOKQ9Y6D0 94 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 HLA-DRB4X5D2U9 266 aa3.27□□□□□ -1.89
SRP54-212ENST00000556992 PRRC2AP48634 2157 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms