RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 A0A087WWL8 130 aa10.03□□□□□ -0.8
SHMT2-222ENST00000555774 F8W1H4 67 aa10.03□□□□□ -0.8
SHMT2-222ENST00000555774 SELENOKQ9Y6D0 94 aa10.03□□□□□ -0.8
SHMT2-222ENST00000555774 A0A096LNT2 108 aa10.02□□□□□ -0.8
SHMT2-222ENST00000555774 NSUN5P1Q3KNT7 163 aa10.02□□□□□ -0.8
SHMT2-222ENST00000555774 TRPT1Q86TN4 253 aaKnown RBP10.02□□□□□ -0.8
SHMT2-222ENST00000555774 C11orf86A6NJI1 115 aa10.02□□□□□ -0.81
SHMT2-222ENST00000555774 VPREB3Q9UKI3 123 aa10.02□□□□□ -0.81
SHMT2-222ENST00000555774 TRGV11A0A075B6L2 103 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 M0QY20 66 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 ZNF256Q9Y2P7 627 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-222ENST00000555774 HOXA3O43365 443 aaPredicted RBP10.01□□□□□ -0.81
SHMT2-222ENST00000555774 ZNF876PQ49A33 203 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 SCGB1D4Q6XE38 83 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 Q8N1Y9 231 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 WFDC12Q8WWY7 111 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 UBE2E2Q96LR5 201 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 MDFICQ9P1T7 246 aa10.01□□□□□ -0.81
SHMT2-222ENST00000555774 ZNF56Q15929 161 aa10□□□□□ -0.81
SHMT2-222ENST00000555774 C10orf99Q6UWK7 81 aa10□□□□□ -0.81
SHMT2-222ENST00000555774 FSHBP01225 129 aa10□□□□□ -0.81
SHMT2-222ENST00000555774 SYNJ2BPP57105 145 aa10□□□□□ -0.81
SHMT2-222ENST00000555774 EDA2RQ9HAV5 297 aa10□□□□□ -0.81
SHMT2-222ENST00000555774 MUC4Q99102 2169 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 TRAV12-2A0A075B6T6 113 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 RPL39P62891 51 aaKnown RBP9.99□□□□□ -0.81
SHMT2-222ENST00000555774 CD300EQ496F6 205 aaPredicted RBP9.99□□□□□ -0.81
SHMT2-222ENST00000555774 FAM74A4Q5TZK3 123 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 MORN3Q6PF18 240 aaPredicted RBP9.99□□□□□ -0.81
SHMT2-222ENST00000555774 SPANXB1Q9NS25 103 aaPredicted RBP9.99□□□□□ -0.81
SHMT2-222ENST00000555774 AKAP6Q13023 2319 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 SVEP1Q4LDE5 3571 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 HOXD3P31249 432 aaPredicted RBP9.99□□□□□ -0.81
SHMT2-222ENST00000555774 SPINK13Q1W4C9 94 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 AMTNQ6UX39 209 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 Q6YL49 198 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 NFE4Q86UQ8 179 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 ZNF702PQ9H963 129 aa9.99□□□□□ -0.81
SHMT2-222ENST00000555774 TGFAP01135 160 aa9.98□□□□□ -0.81
SHMT2-222ENST00000555774 UBE2D1P51668 147 aa9.98□□□□□ -0.81
SHMT2-222ENST00000555774 PLEKHB2Q96CS7 222 aa9.98□□□□□ -0.81
SHMT2-222ENST00000555774 IGKV3-20P01619 116 aa9.98□□□□□ -0.81
SHMT2-222ENST00000555774 SRSF9Q13242 221 aaKnown RBP eCLIP9.98□□□□□ -0.81
SHMT2-222ENST00000555774 ITPR1Q14643 2758 aa9.98□□□□□ -0.81
SHMT2-222ENST00000555774 TRAV2A0A0B4J234 112 aa9.97□□□□□ -0.81
SHMT2-222ENST00000555774 A0A0J9YY99 117 aa9.97□□□□□ -0.81
SHMT2-222ENST00000555774 I3L3M4 83 aa9.97□□□□□ -0.81
SHMT2-222ENST00000555774 ASH1LQ9NR48 2969 aaKnown RBP9.96□□□□□ -0.81
SHMT2-222ENST00000555774 A8MTW9 85 aa9.96□□□□□ -0.81
SHMT2-222ENST00000555774 RPL24P83731 157 aaKnown RBP9.96□□□□□ -0.81
SHMT2-222ENST00000555774 NRGNQ92686 78 aa9.96□□□□□ -0.81
SHMT2-222ENST00000555774 TEX48A0A1B0GUV7 120 aa9.96□□□□□ -0.82
SHMT2-222ENST00000555774 J3QR89 54 aa9.96□□□□□ -0.82
SHMT2-222ENST00000555774 C20orf203Q8NBC4 194 aa9.96□□□□□ -0.82
SHMT2-222ENST00000555774 ZNRF2Q8NHG8 242 aa9.96□□□□□ -0.82
SHMT2-222ENST00000555774 SPTBN4Q9H254 2564 aa9.96□□□□□ -0.82
SHMT2-222ENST00000555774 GAGE13Q4V321 117 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 TMEM170BQ5T4T1 132 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 LYRM7Q5U5X0 104 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 KLHL30-AS1Q8NEE0 82 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 PGPEP1Q9NXJ5 209 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 NCOR2Q9Y618 2525 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 H3BMG7 143 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 PIK3CD-AS1Q5SR53 167 aa9.95□□□□□ -0.82
SHMT2-222ENST00000555774 MRPL16Q9NX20 251 aaKnown RBP9.95□□□□□ -0.82
SHMT2-222ENST00000555774 EMP1P54849 157 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 TCTEX1D4Q5JR98 221 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 SLC25A29Q8N8R3 303 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 PRO0461Q9UI25 63 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 CHD8Q9HCK8 2581 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 LEPROTO15243 131 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 P0DMU3 169 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 FAM231AP0DMU4 169 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 FAM231CP0DMU5 169 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 LGALS3P17931 250 aaKnown RBP9.94□□□□□ -0.82
SHMT2-222ENST00000555774 Q5PR19 223 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 PTH2Q96A98 100 aa9.94□□□□□ -0.82
SHMT2-222ENST00000555774 J3QQQ9 107 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 WFDC2Q14508 124 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 Q8N2B8 174 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 SPTAN1Q13813 2472 aaKnown RBP9.93□□□□□ -0.82
SHMT2-222ENST00000555774 TMEM223A0PJW6 202 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 IGHV4-31P0DP07 118 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 CRYBA4P53673 196 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 TSPEAR-AS2P59090 65 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 DLX4Q92988 240 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-222ENST00000555774 DUX5Q96PT3 197 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 AMELXQ99217 191 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 SPAG8Q99932 426 aaPredicted RBP9.93□□□□□ -0.82
SHMT2-222ENST00000555774 PYGO1Q9Y3Y4 419 aa9.93□□□□□ -0.82
SHMT2-222ENST00000555774 DOPEY1Q5JWR5 2465 aa9.92□□□□□ -0.82
SHMT2-222ENST00000555774 IGHV3-30P01768 117 aa9.92□□□□□ -0.82
SHMT2-222ENST00000555774 IGHV3-30-5P0DP03 117 aa9.92□□□□□ -0.82
SHMT2-222ENST00000555774 PEMTQ9UBM1 199 aa9.92□□□□□ -0.82
SHMT2-222ENST00000555774 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.92□□□□□ -0.822e-7■■■■□ 26
SHMT2-222ENST00000555774 A8MWV9 139 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 TSPAN13O95857 204 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 NDUFA11Q86Y39 141 aa9.91□□□□□ -0.82
SHMT2-222ENST00000555774 RBMY1A1P0DJD3 496 aaKnown RBP9.91□□□□□ -0.82
SHMT2-222ENST00000555774 RBMY1CP0DJD4 496 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms