RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SAP30O75446 220 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 LINC00315P59091 139 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 KRTAP10-3P60369 221 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 SPATA45Q537H7 98 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 TRAV9-2A0A087WT02 112 aa19.35■□□□□ 0.69
CCDC88C-205ENST00000553403 OR11H12B2RN74 326 aa19.35■□□□□ 0.69
CCDC88C-205ENST00000553403 LINC00467Q9BRT7 94 aa19.35■□□□□ 0.69
CCDC88C-205ENST00000553403 MUC4Q99102 2169 aa19.35■□□□□ 0.69
CCDC88C-205ENST00000553403 CBY3A6NI87 242 aa19.34■□□□□ 0.69
CCDC88C-205ENST00000553403 LINC01545Q5VT33 79 aa19.34■□□□□ 0.69
CCDC88C-205ENST00000553403 IGLV1-51P01701 117 aa19.33■□□□□ 0.69
CCDC88C-205ENST00000553403 ATOH7Q8N100 152 aa19.33■□□□□ 0.69
CCDC88C-205ENST00000553403 SMIM2Q9BVW6 85 aa19.33■□□□□ 0.69
CCDC88C-205ENST00000553403 MIEN1Q9BRT3 115 aa19.33■□□□□ 0.68
CCDC88C-205ENST00000553403 SUMO2P61956 95 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-205ENST00000553403 ZNF705AQ6ZN79 300 aaPredicted RBP19.32■□□□□ 0.68
CCDC88C-205ENST00000553403 STHQ8IWL8 128 aa19.32■□□□□ 0.68
CCDC88C-205ENST00000553403 C14orf144Q96I85 54 aa19.32■□□□□ 0.68
CCDC88C-205ENST00000553403 SORL1Q92673 2214 aa19.32■□□□□ 0.68
CCDC88C-205ENST00000553403 LAGE3Q14657 143 aa19.31■□□□□ 0.68
CCDC88C-205ENST00000553403 MDFIQ99750 246 aa19.31■□□□□ 0.68
CCDC88C-205ENST00000553403 FAM110AQ9BQ89 295 aa19.31■□□□□ 0.68
CCDC88C-205ENST00000553403 JPT2Q9H910 190 aa19.31■□□□□ 0.68
CCDC88C-205ENST00000553403 INSP01308 110 aa19.3■□□□□ 0.68
CCDC88C-205ENST00000553403 IFI27L1Q96BM0 104 aa19.3■□□□□ 0.68
CCDC88C-205ENST00000553403 K7EMI3 77 aa19.3■□□□□ 0.68
CCDC88C-205ENST00000553403 TRPT1Q86TN4 253 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-205ENST00000553403 RPL39LQ96EH5 51 aaKnown RBP19.29■□□□□ 0.68
CCDC88C-205ENST00000553403 RPL32P62910 135 aaKnown RBP19.28■□□□□ 0.68
CCDC88C-205ENST00000553403 TMEM158Q8WZ71 300 aa19.28■□□□□ 0.68
CCDC88C-205ENST00000553403 LGALS9BQ3B8N2 356 aa19.27■□□□□ 0.68
CCDC88C-205ENST00000553403 LGALS9CQ6DKI2 356 aa19.27■□□□□ 0.68
CCDC88C-205ENST00000553403 A0A087WWL8 130 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 H0Y8G0 127 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 ZNF415Q09FC8 603 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 BEAN1Q3B7T3 259 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 ZNF876PQ49A33 203 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 SUMO4Q6EEV6 95 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 PTH2Q96A98 100 aa19.27■□□□□ 0.67
CCDC88C-205ENST00000553403 CRYGDP07320 174 aa19.26■□□□□ 0.67
CCDC88C-205ENST00000553403 MAJINQ3KP22 176 aa19.26■□□□□ 0.67
CCDC88C-205ENST00000553403 PIK3CD-AS1Q5SR53 167 aa19.26■□□□□ 0.67
CCDC88C-205ENST00000553403 LINC01587Q99440 93 aa19.26■□□□□ 0.67
CCDC88C-205ENST00000553403 CUBNO60494 3623 aa19.26■□□□□ 0.67
CCDC88C-205ENST00000553403 TCAPO15273 167 aa19.25■□□□□ 0.67
CCDC88C-205ENST00000553403 PF4P02776 101 aa19.25■□□□□ 0.67
CCDC88C-205ENST00000553403 IGLC3P0DOY3 106 aa19.25■□□□□ 0.67
CCDC88C-205ENST00000553403 ORMDL2Q53FV1 153 aa19.25■□□□□ 0.67
CCDC88C-205ENST00000553403 LINC00482Q8N8I6 264 aa19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 F5H697 171 aa19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 IGLL1P15814 213 aa19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 NUTF2P61970 127 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 MCRIP2Q9BUT9 160 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 ST20Q9HBF5 79 aa19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 UQCR10Q9UDW1 63 aa19.24■□□□□ 0.67
CCDC88C-205ENST00000553403 HTN1P15515 57 aa19.23■□□□□ 0.67
CCDC88C-205ENST00000553403 CTAG1AP78358 180 aa19.23■□□□□ 0.67
CCDC88C-205ENST00000553403 M0R2P5 195 aa19.22■□□□□ 0.67
CCDC88C-205ENST00000553403 ATP5LO75964 103 aa19.22■□□□□ 0.67
CCDC88C-205ENST00000553403 ATRQ13535 2644 aa19.22■□□□□ 0.67
CCDC88C-205ENST00000553403 TRBV6-5A0A0K0K1A5 114 aa19.21■□□□□ 0.67
CCDC88C-205ENST00000553403 HSBP1L1C9JCN9 74 aa19.21■□□□□ 0.67
CCDC88C-205ENST00000553403 XCL2Q9UBD3 114 aa19.21■□□□□ 0.67
CCDC88C-205ENST00000553403 NUDT3O95989 172 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 FAM74A4Q5TZK3 123 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 SPATA3Q8NHX4 192 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 SPXQ9BT56 116 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 CSTL1Q9H114 145 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 C19orf73Q9NVV2 129 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 C18orf15Q96N68 181 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 PMCHL2Q9BQD1 86 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 GOLT1BQ9Y3E0 138 aa19.2■□□□□ 0.66
CCDC88C-205ENST00000553403 FBN1P35555 2871 aaKnown RBP19.19■□□□□ 0.66
CCDC88C-205ENST00000553403 POLR2KP53803 58 aaKnown RBP19.19■□□□□ 0.66
CCDC88C-205ENST00000553403 ZNF56Q15929 161 aa19.19■□□□□ 0.66
CCDC88C-205ENST00000553403 C11orf72Q8NBR9 251 aa19.19■□□□□ 0.66
CCDC88C-205ENST00000553403 hDV102S1A0JD36 115 aa19.18■□□□□ 0.66
CCDC88C-205ENST00000553403 C1orf158Q8N1D5 194 aa19.18■□□□□ 0.66
CCDC88C-205ENST00000553403 M0QY20 66 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 MRPL52Q86TS9 123 aaKnown RBP19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 A8MWV9 139 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 VCYO14598 125 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 EDA2RQ9HAV5 297 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 COL6A5A8TX70 2615 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 WNK1Q9H4A3 2382 aa19.17■□□□□ 0.66
CCDC88C-205ENST00000553403 TOMM6Q96B49 74 aa19.16■□□□□ 0.66
CCDC88C-205ENST00000553403 PRM2P04554 102 aa19.15■□□□□ 0.66
CCDC88C-205ENST00000553403 TMEM208Q9BTX3 173 aa19.15■□□□□ 0.66
CCDC88C-205ENST00000553403 G0S2P27469 103 aa19.14■□□□□ 0.66
CCDC88C-205ENST00000553403 PRSS1P07477 247 aa19.14■□□□□ 0.65
CCDC88C-205ENST00000553403 LBHQ53QV2 105 aaPredicted RBP19.13■□□□□ 0.65
CCDC88C-205ENST00000553403 MORN3Q6PF18 240 aaPredicted RBP19.13■□□□□ 0.65
CCDC88C-205ENST00000553403 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP19.13■□□□□ 0.65
CCDC88C-205ENST00000553403 DNHD1Q96M86 4753 aa19.13■□□□□ 0.65
CCDC88C-205ENST00000553403 TRBV27A0A0K0K1C4 114 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 SDHAF1A6NFY7 115 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 LINC01549A6NIU2 74 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 H7C1H1 209 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 INSL3P51460 131 aa19.12■□□□□ 0.65
CCDC88C-205ENST00000553403 ODF1Q14990 250 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms