RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 PYDC1Q8WXC3 89 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 RASL12Q9NYN1 266 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 KLK9Q9UKQ9 250 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 MUC22E2RYF6 1773 aaPredicted RBP2.3□□□□□ -2.04
LIMA1-210ENST00000552045 DOCK2Q92608 1830 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 TET1Q8NFU7 2136 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 COL6A5A8TX70 2615 aa2.3□□□□□ -2.04
LIMA1-210ENST00000552045 RYR3Q15413 4870 aa2.29□□□□□ -2.04
LIMA1-210ENST00000552045 SDK1Q7Z5N4 2213 aa2.29□□□□□ -2.04
LIMA1-210ENST00000552045 KPNA4O00629 521 aaPredicted RBP2.29□□□□□ -2.04
LIMA1-210ENST00000552045 CDK6Q00534 326 aa2.29□□□□□ -2.04
LIMA1-210ENST00000552045 DEFB119Q8N690 84 aa2.29□□□□□ -2.04
LIMA1-210ENST00000552045 TCEAL2Q9H3H9 227 aaPredicted RBP2.29□□□□□ -2.04
LIMA1-210ENST00000552045 C19orf12Q9NSK7 152 aa2.29□□□□□ -2.04
LIMA1-210ENST00000552045 APCP25054 2843 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 CCDC160A6NGH7 325 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 ZNF736B4DX44 427 aaPredicted RBP2.28□□□□□ -2.04
LIMA1-210ENST00000552045 FABP2P12104 132 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 ZNF93P35789 620 aaPredicted RBP2.28□□□□□ -2.04
LIMA1-210ENST00000552045 TEX261Q6UWH6 196 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 C2orf82Q6UX34 121 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 TSTD1Q8NFU3 115 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 MUCL1Q96DR8 90 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 HYLS1Q96M11 299 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 TP53RKQ96S44 253 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 TRAPPC2LQ9UL33 140 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 U3KQ87 197 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 MYLKQ15746 1914 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 PLXNA4Q9HCM2 1894 aa2.28□□□□□ -2.04
LIMA1-210ENST00000552045 EXPH5Q8NEV8 1989 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 TRAV10A0A0B4J240 114 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 IGKV2-29A2NJV5 120 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-210ENST00000552045 OR2T8A6NH00 312 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 SDC2P34741 201 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 FAM216BQ8N7L0 139 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 TMEM35BQ8NCS4 154 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 RAB37Q96AX2 223 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 SNURFQ9Y675 71 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 SIPA1L3O60292 1781 aaPredicted RBP2.27□□□□□ -2.05
LIMA1-210ENST00000552045 ATG2AQ2TAZ0 1938 aa2.27□□□□□ -2.05
LIMA1-210ENST00000552045 ARFGEF3Q5TH69 2177 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 KMT2CQ8NEZ4 4911 aaKnown RBP2.26□□□□□ -2.05
LIMA1-210ENST00000552045 A0A087WSZ3 146 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 IGHV1-58A0A0C4DH39 117 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 MT-ND6P03923 174 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 COX6B1P14854 86 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 RPS3P23396 243 aaKnown RBP eCLIP2.26□□□□□ -2.05
LIMA1-210ENST00000552045 CD52P31358 61 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 ZNF833PQ6ZTB9 187 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 TAF9BQ9HBM6 251 aa2.26□□□□□ -2.05
LIMA1-210ENST00000552045 ASCC3Q8N3C0 2202 aaKnown RBP2.26□□□□□ -2.05
LIMA1-210ENST00000552045 TNRC6BQ9UPQ9 1833 aaKnown RBP2.26□□□□□ -2.05
LIMA1-210ENST00000552045 A0A087WX48 190 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 hDV103S1A0JD37 113 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 ERC2-IT1O76042 136 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 CD2P06729 351 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 NDUFA6P56556 154 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 MCEEQ96PE7 176 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 GGACTQ9BVM4 153 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 UBR4Q5T4S7 5183 aa2.25□□□□□ -2.05
LIMA1-210ENST00000552045 DIDO1Q9BTC0 2240 aaKnown RBP2.25□□□□□ -2.05
LIMA1-210ENST00000552045 RYR1P21817 5038 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 IGKV3-7A0A075B6H7 116 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 IGKV2-40A0A087WW87 121 aaPredicted RBP2.24□□□□□ -2.05
LIMA1-210ENST00000552045 LYRM1O43325 122 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 IGKV2D-40P01614 121 aaPredicted RBP2.24□□□□□ -2.05
LIMA1-210ENST00000552045 TMEM14EPQ6UXP3 125 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 PATE1Q8WXA2 126 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 MED13Q9UHV7 2174 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 MEGF8Q7Z7M0 2845 aa2.24□□□□□ -2.05
LIMA1-210ENST00000552045 TGP01266 2768 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 TRAV27A0A087WT01 109 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 CCL16O15467 120 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 LINC00305Q7Z4B0 112 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 ARPINQ7Z6K5 226 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 LRRC18Q8N456 261 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 DIRC1Q969H9 104 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 LXNQ9BS40 222 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 TAS2R7Q9NYW3 318 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 ACANP16112 2415 aa2.23□□□□□ -2.05
LIMA1-210ENST00000552045 GOLGA4Q13439 2230 aaKnown RBP2.23□□□□□ -2.05
LIMA1-210ENST00000552045 LOC110117498A0A087WWA1 95 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 ARL5CA6NH57 179 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 KRTAP26-1Q6PEX3 210 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 OR5H6Q8NGV6 325 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 Q8TAT8 98 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 SMR3AQ99954 134 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 CDC42SE1Q9NRR8 79 aa2.22□□□□□ -2.05
LIMA1-210ENST00000552045 EPPK1P58107 5090 aaKnown RBP2.21□□□□□ -2.06
LIMA1-210ENST00000552045 BSNQ9UPA5 3926 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 WNK1Q9H4A3 2382 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 TRBV7-6A0A0J9YX20 115 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 J3KT08 172 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 CXCL8P10145 99 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 RPS28P62857 69 aaKnown RBP2.21□□□□□ -2.06
LIMA1-210ENST00000552045 ANK2Q01484 3957 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 FAM74A1Q5RGS3 127 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 KRTAP5-7Q6L8G8 165 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 OR4B1Q8NGF8 309 aa2.21□□□□□ -2.06
LIMA1-210ENST00000552045 SPEF2Q9C093 1822 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms