RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 CXCL1P09341 107 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 GATA1P15976 413 aaPredicted RBP5.03□□□□□ -1.6
PTCH1-219ENST00000549678 GAGE1Q13065 139 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 GAGE4Q13068 117 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 GAGE5Q13069 117 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 GAGE13Q4V321 117 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 OR10J3Q5JRS4 329 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 PIK3CD-AS1Q5SR53 167 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 DNLZQ5SXM8 178 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 DMRTA1Q5VZB9 504 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 LYPD5Q6UWN5 251 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 ZFP2Q6ZN57 461 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 Q6ZR54 194 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 SLC25A29Q8N8R3 303 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.03□□□□□ -1.6
PTCH1-219ENST00000549678 UPK3BQ9BT76 320 aa5.03□□□□□ -1.6
PTCH1-219ENST00000549678 ZNF727A8MUV8 499 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 TMEM250H0YL14 139 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 RTL8CO15255 209 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 MGPP08493 103 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 GZMBP10144 247 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 EVI2AP22794 236 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 RAB14P61106 215 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 C6orf223Q8N319 242 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 FER1L6-AS1Q8NA97 138 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 OR10AG1Q8NH19 301 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 BORCS7Q96B45 105 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 SFRP2Q96HF1 295 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 FAM210AQ96ND0 272 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 AP1S3Q96PC3 154 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 SMIM7Q9BQ49 75 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 JPT2Q9H910 190 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 LY96Q9Y6Y9 160 aa5.02□□□□□ -1.61
PTCH1-219ENST00000549678 ABCA13Q86UQ4 5058 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 GATCO43716 136 aaKnown RBP5.01□□□□□ -1.61
PTCH1-219ENST00000549678 IGLV2-8P01709 118 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 ERVFC1-1P60608 527 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 CACNG7P62955 275 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 RPL36AP83881 106 aaKnown RBP5.01□□□□□ -1.61
PTCH1-219ENST00000549678 TEX261Q6UWH6 196 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 SMIM15Q7Z3B0 74 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 ATP6V0E2Q8NHE4 81 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 RPL36ALQ969Q0 106 aaKnown RBP5.01□□□□□ -1.61
PTCH1-219ENST00000549678 SAMD10Q9BYL1 202 aa5.01□□□□□ -1.61
PTCH1-219ENST00000549678 RPP21Q9H633 154 aaKnown RBP5.01□□□□□ -1.61
PTCH1-219ENST00000549678 A0A1W2PPQ1 181 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 F2Z2F3 143 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 SNAI2O43623 268 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 OR5AL1P0C617 328 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 TRGC1P0CF51 173 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 PEA15Q15121 130 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 KCNIP4Q6PIL6 250 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 WFDC10BQ8IUB3 73 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 C14orf178Q8N769 122 aaPredicted RBP5□□□□□ -1.61
PTCH1-219ENST00000549678 NUDT10Q8NFP7 164 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 LYPD6BQ8NI32 183 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 OCC1Q8TAD7 63 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 NUDT11Q96G61 164 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 RNASE7Q9H1E1 156 aaKnown RBP5□□□□□ -1.61
PTCH1-219ENST00000549678 GTSF1LQ9H1H1 148 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 SCRT2Q9NQ03 307 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 URGCP-MRPS24S4R325 110 aa5□□□□□ -1.61
PTCH1-219ENST00000549678 TRBV20OR9-2A0A075B6H5 130 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 C19orf71A6NCJ1 209 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 H7C1H1 209 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 SRP19P09132 144 aaKnown RBP4.99□□□□□ -1.61
PTCH1-219ENST00000549678 BTF3P20290 206 aaKnown RBP4.99□□□□□ -1.61
PTCH1-219ENST00000549678 RAB4BP61018 213 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 TWIST1Q15672 202 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 LYZL1Q6UWQ5 148 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 C10orf126Q8N4M7 172 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 C15orf54Q8N8G6 183 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 FAT1Q14517 4588 aa4.99□□□□□ -1.61
PTCH1-219ENST00000549678 A0A087WWC5 75 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGHV3-38A0A0C4DH36 116 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 TRBV10-1A0A0K0K1A3 114 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 A8MWL6 223 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 K7EN84 100 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 EREGO14944 169 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 PSCAO43653 123 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGHV3-30P01768 117 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGHV3-33P01772 117 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 CRYGDP07320 174 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGLC6P0CF74 106 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGHV3-30-3P0DP02 117 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 IGHV3-30-5P0DP03 117 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 LINC00315P59091 139 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 ADIRFQ15847 76 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 FAM74A3Q4VXF1 159 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 LELP1Q5T871 98 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 Q6ZSN1 163 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 NFE4Q86UQ8 179 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 SSBP4Q9BWG4 385 aaPredicted RBP4.98□□□□□ -1.61
PTCH1-219ENST00000549678 DPH3P1Q9H4G8 78 aa4.98□□□□□ -1.61
PTCH1-219ENST00000549678 TRBV7-3A0A075B6L6 115 aa4.97□□□□□ -1.61
PTCH1-219ENST00000549678 K7EP13 123 aa4.97□□□□□ -1.61
PTCH1-219ENST00000549678 NDUFS6O75380 124 aaKnown RBP4.97□□□□□ -1.61
PTCH1-219ENST00000549678 NTF3P20783 257 aa4.97□□□□□ -1.61
PTCH1-219ENST00000549678 TIRAPP58753 221 aa4.97□□□□□ -1.61
PTCH1-219ENST00000549678 TMEM241Q24JQ0 296 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms