RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ORAOV1Q8WV07 137 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 RAX2Q96IS3 184 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 TRRAPQ9Y4A5 3859 aa8.21□□□□□ -1.09
CUX1-212ENST00000547394 RBMY1BA6NDE4 496 aaKnown RBP8.21□□□□□ -1.1
CUX1-212ENST00000547394 RBMY1EA6NEQ0 496 aaKnown RBP8.21□□□□□ -1.1
CUX1-212ENST00000547394 RBMY1DP0C7P1 496 aaKnown RBP8.21□□□□□ -1.1
CUX1-212ENST00000547394 Q8N2B8 174 aa8.21□□□□□ -1.1
CUX1-212ENST00000547394 COX11Q9Y6N1 276 aa8.21□□□□□ -1.1
CUX1-212ENST00000547394 LGALS9O00182 355 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 SMIM17P0DL12 118 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 CDKN1BP46527 198 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 RNF152Q8N8N0 203 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 FOXC2Q99958 501 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 Q8N8P6 123 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 DPH3P1Q9H4G8 78 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 IGHV4-4A0A075B6R2 117 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 NUDT3O95989 172 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 C4orf3Q8WVX3 66 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 NXT2Q9NPJ8 142 aaKnown RBP8.2□□□□□ -1.1
CUX1-212ENST00000547394 SCRT2Q9NQ03 307 aa8.2□□□□□ -1.1
CUX1-212ENST00000547394 FCER1GP30273 86 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 NMUP48645 174 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 UBE2V1Q13404 147 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 MPV17L2Q567V2 206 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 AP1S3Q96PC3 154 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 IGHV3OR16-12A0A075B7B8 117 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 ZC2HC1BQ5TFG8 222 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 AMTNQ6UX39 209 aa8.19□□□□□ -1.1
CUX1-212ENST00000547394 IGHV3-16A0A0C4DH30 117 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 CBY3A6NI87 242 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 SUMO2P61956 95 aaKnown RBP8.18□□□□□ -1.1
CUX1-212ENST00000547394 LAGE3Q14657 143 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 PCP2Q8IVA1 136 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 SMIM2Q9BVW6 85 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 PROK1P58294 105 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 LINC00315P59091 139 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 SUMO4Q6EEV6 95 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 SLC25A34Q6PIV7 304 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 LINC01006Q8NI28 216 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 CSTL1Q9H114 145 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 WFDC10AQ9H1F0 79 aa8.18□□□□□ -1.1
CUX1-212ENST00000547394 NSUN5P1Q3KNT7 163 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 ST20Q9HBF5 79 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 TMEM160Q9NX00 188 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 Q9UF83 564 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 IGHV1OR15-1A0A075B7D0 117 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 P0DMU3 169 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 FAM231AP0DMU4 169 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 FAM231CP0DMU5 169 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 EMP1P54849 157 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 VAMP3Q15836 100 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 ZNF56Q15929 161 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 DEFB114Q30KQ6 69 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 FOXI2Q6ZQN5 318 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 MAP6D1Q9H9H5 199 aa8.17□□□□□ -1.1
CUX1-212ENST00000547394 ZNF256Q9Y2P7 627 aaPredicted RBP8.17□□□□□ -1.1
CUX1-212ENST00000547394 IGKV2D-26A0A0A0MRZ7 120 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 TMEM238LA0A1B0GVL6 79 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 CCL24O00175 119 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 ZNF876PQ49A33 203 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 GTSCR1Q86UQ5 136 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 OR4C5Q8NGB2 326 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 XCL2Q9UBD3 114 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 KIF25-AS1Q9Y6Z4 181 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 H3BMM0 161 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 RBX1P62877 108 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 ODF1Q14990 250 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 MRPL35Q9NZE8 188 aaKnown RBP8.16□□□□□ -1.1
CUX1-212ENST00000547394 PEMTQ9UBM1 199 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 RPL39P62891 51 aaKnown RBP8.16□□□□□ -1.1
CUX1-212ENST00000547394 MRAP2Q96G30 205 aa8.16□□□□□ -1.1
CUX1-212ENST00000547394 LGALS9BQ3B8N2 356 aa8.15□□□□□ -1.1
CUX1-212ENST00000547394 LGALS9CQ6DKI2 356 aa8.15□□□□□ -1.1
CUX1-212ENST00000547394 RNF151Q2KHN1 245 aa8.15□□□□□ -1.11
CUX1-212ENST00000547394 K7EMI3 77 aa8.14□□□□□ -1.11
CUX1-212ENST00000547394 HLA-DRB4P13762 266 aa8.14□□□□□ -1.11
CUX1-212ENST00000547394 ODF3L2Q3SX64 289 aa8.14□□□□□ -1.11
CUX1-212ENST00000547394 C2orf91Q6ZV80 131 aa8.14□□□□□ -1.11
CUX1-212ENST00000547394 HLA-DRB4X5D2U9 266 aa8.14□□□□□ -1.11
CUX1-212ENST00000547394 TRBV7-9A0A0J9YWB2 115 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 DUSP14O95147 198 aaKnown RBP8.13□□□□□ -1.11
CUX1-212ENST00000547394 C9orf85Q96MD7 179 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 SCGB3A1Q96QR1 104 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 F8P00451 2351 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 SAP30O75446 220 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 CRYGDP07320 174 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 BVES-AS1Q5T3Y7 98 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 SAMD13Q5VXD3 122 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 C2orf66Q6UXQ4 117 aa8.13□□□□□ -1.11
CUX1-212ENST00000547394 OPRPNQ99935 248 aaPredicted RBP8.13□□□□□ -1.11
CUX1-212ENST00000547394 SDHAF1A6NFY7 115 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 LINC01546A6NGU7 62 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 TAX1BP3O14907 124 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 COX8AP10176 69 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 FGF6P10767 208 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 MORN3Q6PF18 240 aaPredicted RBP8.12□□□□□ -1.11
CUX1-212ENST00000547394 TMEM86BQ8N661 226 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 LINC01587Q99440 93 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 NXPH4O95158 308 aa8.12□□□□□ -1.11
CUX1-212ENST00000547394 LY6G6DO95868 133 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms