RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 CHTOPQ9Y3Y2 248 aaKnown RBP13.2□□□□□ -0.3
PTPN6-222ENST00000543744 HLA-DRB4X5D2U9 266 aa13.2□□□□□ -0.3
PTPN6-222ENST00000543744 AMMECR1LQ6DCA0 310 aa13.2□□□□□ -0.3
PTPN6-222ENST00000543744 TEX15Q9BXT5 2789 aa13.19□□□□□ -0.3
PTPN6-222ENST00000543744 LINC01619G3V211 115 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 H3BRM9 83 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 FAM74A4Q5TZK3 123 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 AMTNQ6UX39 209 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 EPG5Q9HCE0 2579 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 TRBV25-1A0A075B6N4 114 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 VCYO14598 125 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 POLR2KP53803 58 aaKnown RBP13.18□□□□□ -0.3
PTPN6-222ENST00000543744 KRTAP1-3Q8IUG1 177 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 BAALCQ8WXS3 180 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 CHAC1Q9BUX1 264 aa13.18□□□□□ -0.3
PTPN6-222ENST00000543744 OR11H1Q8NG94 326 aa13.17□□□□□ -0.3
PTPN6-222ENST00000543744 CYSLTR1Q9Y271 337 aa13.17□□□□□ -0.3
PTPN6-222ENST00000543744 TRAV8-6A0A0B4J262 113 aa13.17□□□□□ -0.3
PTPN6-222ENST00000543744 KIR2DL4Q99706 377 aa13.17□□□□□ -0.3
PTPN6-222ENST00000543744 PEMTQ9UBM1 199 aa13.17□□□□□ -0.3
PTPN6-222ENST00000543744 ZFP2Q6ZN57 461 aa13.16□□□□□ -0.3
PTPN6-222ENST00000543744 C4orf3Q8WVX3 66 aa13.16□□□□□ -0.3
PTPN6-222ENST00000543744 SDHAF1A6NFY7 115 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 PRSS29PA6NIE9 313 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 LINC01549A6NIU2 74 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 ZNF56Q15929 161 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 KHDC1LQ5JSQ8 128 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 TRGV11A0A075B6L2 103 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 TRBV6-5A0A0K0K1A5 114 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 C9orf118A6NHY6 69 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 KNCNA6PVL3 124 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 GCSHP23434 173 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 DEFB131AP59861 70 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 MAPKAPK5-AS1Q8N8E1 139 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 TP53TG1Q9Y2A0 90 aa13.15□□□□□ -0.3
PTPN6-222ENST00000543744 CRYGDP07320 174 aa13.14□□□□□ -0.31
PTPN6-222ENST00000543744 ZNF876PQ49A33 203 aa13.14□□□□□ -0.31
PTPN6-222ENST00000543744 DUX3Q96PT4 197 aa13.14□□□□□ -0.31
PTPN6-222ENST00000543744 AGRNO00468 2067 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 TRBV27A0A0K0K1C4 114 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 TMEM86BQ8N661 226 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 TRAV2A0A0B4J234 112 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 M0QY20 66 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 FOSL1P15407 271 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 DEFB104AQ8WTQ1 72 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 APCP25054 2843 aa13.13□□□□□ -0.31
PTPN6-222ENST00000543744 OR11H12B2RN74 326 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 TMEM61Q8N0U2 210 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 OR11H2Q8NH07 326 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 MYO9AB2RTY4 2548 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 IGIPA6NJ69 53 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 TEX29Q8N6K0 151 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 KLHL30-AS1Q8NEE0 82 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 RAB37Q96AX2 223 aa13.12□□□□□ -0.31
PTPN6-222ENST00000543744 H3BMM0 161 aa13.11□□□□□ -0.31
PTPN6-222ENST00000543744 H3BUT2 72 aa13.11□□□□□ -0.31
PTPN6-222ENST00000543744 SMIM13P0DJ93 91 aa13.11□□□□□ -0.31
PTPN6-222ENST00000543744 RBMY1A1P0DJD3 496 aaKnown RBP13.11□□□□□ -0.31
PTPN6-222ENST00000543744 RBMY1CP0DJD4 496 aa13.11□□□□□ -0.31
PTPN6-222ENST00000543744 FXYD2P54710 66 aa13.11□□□□□ -0.31
PTPN6-222ENST00000543744 RBMY1FQ15415 496 aaKnown RBP13.11□□□□□ -0.31
PTPN6-222ENST00000543744 TRPT1Q86TN4 253 aaKnown RBP13.11□□□□□ -0.31
PTPN6-222ENST00000543744 DLX4Q92988 240 aaPredicted RBP13.11□□□□□ -0.31
PTPN6-222ENST00000543744 ZNF256Q9Y2P7 627 aaPredicted RBP13.11□□□□□ -0.31
PTPN6-222ENST00000543744 SORL1Q92673 2214 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 K7EP13 123 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 TSHBP01222 138 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 HTN1P15515 57 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 RIPPLY3P57055 190 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 WFDC11Q8NEX6 87 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 DYNLRB2Q8TF09 96 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 TMEM141Q96I45 108 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 A8MTW9 85 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 RPL39P62891 51 aaKnown RBP13.1□□□□□ -0.31
PTPN6-222ENST00000543744 MORN3Q6PF18 240 aaPredicted RBP13.1□□□□□ -0.31
PTPN6-222ENST00000543744 CEND1Q8N111 149 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 TM2D2Q9BX73 214 aa13.1□□□□□ -0.31
PTPN6-222ENST00000543744 GAGE10A6NGK3 116 aa13.09□□□□□ -0.31
PTPN6-222ENST00000543744 Q6ZSV7 163 aa13.09□□□□□ -0.31
PTPN6-222ENST00000543744 TIMM17AQ99595 171 aa13.09□□□□□ -0.31
PTPN6-222ENST00000543744 MYMXA0A1B0GTQ4 84 aa13.08□□□□□ -0.31
PTPN6-222ENST00000543744 E9PLD3 99 aa13.08□□□□□ -0.31
PTPN6-222ENST00000543744 PMVKQ15126 192 aa13.08□□□□□ -0.31
PTPN6-222ENST00000543744 TAL2Q16559 108 aa13.08□□□□□ -0.31
PTPN6-222ENST00000543744 JMJD8Q96S16 334 aa13.08□□□□□ -0.31
PTPN6-222ENST00000543744 NAA38Q9BRA0 125 aaKnown RBP13.08□□□□□ -0.31
PTPN6-222ENST00000543744 GTF2H5Q6ZYL4 71 aa13.08□□□□□ -0.32
PTPN6-222ENST00000543744 RBMY1BA6NDE4 496 aaKnown RBP13.07□□□□□ -0.32
PTPN6-222ENST00000543744 RBMY1EA6NEQ0 496 aaKnown RBP13.07□□□□□ -0.32
PTPN6-222ENST00000543744 RBMY1DP0C7P1 496 aaKnown RBP13.07□□□□□ -0.32
PTPN6-222ENST00000543744 PAPPA-AS1Q5QFB9 102 aa13.07□□□□□ -0.32
PTPN6-222ENST00000543744 ITPR3Q14573 2671 aa13.07□□□□□ -0.32
PTPN6-222ENST00000543744 DNAJC9-AS1A6NH13 148 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 RHOHQ15669 191 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 DEFB114Q30KQ6 69 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 HIST2H2BDQ6DRA6 164 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 PRADC1Q9BSG0 188 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 CST9LQ9H4G1 147 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 MAP6D1Q9H9H5 199 aa13.06□□□□□ -0.32
PTPN6-222ENST00000543744 TLN2Q9Y4G6 2542 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms