RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 X6R8D5 127 aa12.77□□□□□ -0.36
CLIP1-215ENST00000541108 PLAC8L1A1L4L8 177 aa12.77□□□□□ -0.37
CLIP1-215ENST00000541108 LINC00315P59091 139 aa12.77□□□□□ -0.37
CLIP1-215ENST00000541108 DEFB135Q30KP9 77 aa12.77□□□□□ -0.37
CLIP1-215ENST00000541108 C18orf32Q8TCD1 76 aa12.77□□□□□ -0.37
CLIP1-215ENST00000541108 OVOL2Q9BRP0 275 aa12.77□□□□□ -0.37
CLIP1-215ENST00000541108 CRYGDP07320 174 aa12.76□□□□□ -0.37
CLIP1-215ENST00000541108 SNRPEP62304 92 aaKnown RBP12.76□□□□□ -0.37
CLIP1-215ENST00000541108 RNF183Q96D59 192 aa12.76□□□□□ -0.37
CLIP1-215ENST00000541108 JPT2Q9H910 190 aa12.76□□□□□ -0.37
CLIP1-215ENST00000541108 PRELID3AQ96N28 172 aa12.75□□□□□ -0.37
CLIP1-215ENST00000541108 A0A087WWL8 130 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 HOXA5P20719 270 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 BAGE3Q86Y29 109 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 OR11H2Q8NH07 326 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 NOP10Q9NPE3 64 aaKnown RBP12.73□□□□□ -0.37
CLIP1-215ENST00000541108 MRPL16Q9NX20 251 aaKnown RBP12.73□□□□□ -0.37
CLIP1-215ENST00000541108 TP53TG1Q9Y2A0 90 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 SAMD10Q9BYL1 202 aa12.73□□□□□ -0.37
CLIP1-215ENST00000541108 TRGV1A0A0A0MS02 117 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 PPP1R17O96001 155 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 MGPP08493 103 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 MIFP14174 115 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 FAM74A4Q5TZK3 123 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 CFAP126Q5VTH2 177 aa12.72□□□□□ -0.37
CLIP1-215ENST00000541108 RHODO00212 210 aa12.71□□□□□ -0.37
CLIP1-215ENST00000541108 RS1O15537 224 aa12.71□□□□□ -0.37
CLIP1-215ENST00000541108 UFSP1Q6NVU6 142 aa12.71□□□□□ -0.37
CLIP1-215ENST00000541108 ZFP2Q6ZN57 461 aa12.71□□□□□ -0.37
CLIP1-215ENST00000541108 PRSS47A8MTI9 375 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 SMKR1H3BMG3 65 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 TNFRSF6BO95407 300 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 NCR2O95944 276 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 NPYP01303 97 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 ESDP10768 282 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 Q6ZTI0 123 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 MGAM2Q2M2H8 2515 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 DNAH3Q8TD57 4116 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 TRAV26-2A0A0B4J265 109 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 F5H697 171 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 CIDEAO60543 219 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 GAS8-AS1O95177 125 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 NRACQ8N912 160 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 EDA2RQ9HAV5 297 aa12.7□□□□□ -0.38
CLIP1-215ENST00000541108 NOTCH1P46531 2555 aa12.69□□□□□ -0.38
CLIP1-215ENST00000541108 SERF1AO75920 110 aa12.69□□□□□ -0.38
CLIP1-215ENST00000541108 IQCJQ1A5X6 159 aa12.69□□□□□ -0.38
CLIP1-215ENST00000541108 TRAV4A0A0B4J268 109 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 ZNF56Q15929 161 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 SUMO4Q6EEV6 95 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 NIT1Q86X76 327 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 OR4C5Q8NGB2 326 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 C18orf15Q96N68 181 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 MAP1LC3AQ9H492 121 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 NBEAL1Q6ZS30 2694 aa12.68□□□□□ -0.38
CLIP1-215ENST00000541108 K7EIL1 84 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 LINC00614P0C842 121 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 GATA1P15976 413 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-215ENST00000541108 LINC00310P59036 64 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 HIST3H2BBQ8N257 126 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 LINC00612Q8N6U2 182 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 Q8NAQ8 132 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 PRSS3P2Q8NHM4 247 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 CHCHD1Q96BP2 118 aaKnown RBP12.67□□□□□ -0.38
CLIP1-215ENST00000541108 C20orf78Q9BR46 151 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 LOC105371267A0A1B0GV96 52 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 LYRM9A8MSI8 78 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 H7C1H1 209 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 M0QY20 66 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 EMP1P54849 157 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 NACAE9PAV3 2078 aa12.67□□□□□ -0.38
CLIP1-215ENST00000541108 NBEAL2Q6ZNJ1 2754 aa12.66□□□□□ -0.38
CLIP1-215ENST00000541108 IGHV4-28A0A0C4DH34 117 aa12.66□□□□□ -0.38
CLIP1-215ENST00000541108 NUPR1O60356 82 aa12.66□□□□□ -0.38
CLIP1-215ENST00000541108 NXT2Q9NPJ8 142 aaKnown RBP12.66□□□□□ -0.38
CLIP1-215ENST00000541108 TRGV2A0A075B6R0 118 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 GAGE12BA1L429 117 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 GAGE7O76087 117 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 GAGE12FP0CL80 117 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 GAGE12GP0CL81 117 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 GAGE12IP0CL82 117 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 S100A2P29034 98 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 SUMO2P61956 95 aaKnown RBP12.65□□□□□ -0.38
CLIP1-215ENST00000541108 URB1-AS1Q96HZ7 61 aa12.65□□□□□ -0.38
CLIP1-215ENST00000541108 IGHV3-53P01767 116 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 PRB2P02812 416 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-215ENST00000541108 IFI27P40305 119 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-215ENST00000541108 NIT2Q9NQR4 276 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 IGHV3-73A0A0B4J1V6 119 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 TRBV6-5A0A0K0K1A5 114 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 LOC389332A0A1B0GUA5 103 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 HSBP1O75506 76 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 RNASEKQ6P5S7 137 aaKnown RBP12.64□□□□□ -0.39
CLIP1-215ENST00000541108 RPL39LQ96EH5 51 aaKnown RBP12.64□□□□□ -0.39
CLIP1-215ENST00000541108 ZNF479Q96JC4 524 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 PACRGQ96M98 296 aaPredicted RBP12.64□□□□□ -0.39
CLIP1-215ENST00000541108 AP5S1Q9NUS5 200 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 DKK2Q9UBU2 259 aa12.64□□□□□ -0.39
CLIP1-215ENST00000541108 PMCHP20382 165 aa12.63□□□□□ -0.39
CLIP1-215ENST00000541108 RPL32P62910 135 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms