RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C9orf47Q6ZRZ4 202 aa9.32□□□□□ -0.92
USP3-203ENST00000538686 PHLDA3Q9Y5J5 127 aa9.32□□□□□ -0.92
USP3-203ENST00000538686 PRAC2D3DTV9 90 aa9.31□□□□□ -0.92
USP3-203ENST00000538686 BAALC-AS2P0C853 105 aa9.31□□□□□ -0.92
USP3-203ENST00000538686 C1orf195Q5TG92 126 aa9.31□□□□□ -0.92
USP3-203ENST00000538686 COL6A3P12111 3177 aa9.31□□□□□ -0.92
USP3-203ENST00000538686 IGHV3OR16-10A0A075B7F0 116 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 SMIM26A0A096LP01 95 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 IGHV3-72A0A0B4J1Y9 119 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 DNAL4O96015 105 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 S100A4P26447 101 aaKnown RBP9.3□□□□□ -0.92
USP3-203ENST00000538686 HES7Q9BYE0 225 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 IGLV3-9A0A075B6K5 115 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 LY6G6EA0A0G2JKS1 128 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 LINC01565O15544 149 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 IGHG2P01859 326 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 IGHV3-30-3P0DP02 117 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 RPL39P62891 51 aaKnown RBP9.3□□□□□ -0.92
USP3-203ENST00000538686 NSUN5P1Q3KNT7 163 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 IGFL4Q6B9Z1 124 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 TMEM243Q9BU79 118 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 U3KQA8 63 aa9.3□□□□□ -0.92
USP3-203ENST00000538686 MKI67P46013 3256 aaKnown RBP9.29□□□□□ -0.92
USP3-203ENST00000538686 TRGV5A0A0B4J1U4 118 aa9.29□□□□□ -0.92
USP3-203ENST00000538686 TRBV27A0A0K0K1C4 114 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 FHL2Q14192 279 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 VSIG2Q96IQ7 327 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 PLXNB1O43157 2135 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 M0R1W7 72 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 MSMPQ1L6U9 139 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 ARFGEF3Q5TH69 2177 aa9.28□□□□□ -0.92
USP3-203ENST00000538686 TRAV21A0A0B4J279 112 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 TRBV6-5A0A0K0K1A5 114 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 BEAN1Q3B7T3 259 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 C20orf173Q96LM9 149 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 OVOL2Q9BRP0 275 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 NDUFA12Q9UI09 145 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 VCANP13611 3396 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 IGLV11-55A0A075B6I3 123 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 IGHV3-64A0A075B6Q5 118 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 IGHV1-3A0A0C4DH29 117 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 IGHV1-58A0A0C4DH39 117 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 NXPH4O95158 308 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 ADAMTSL4-AS1Q5T5F5 129 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 SPRR3Q9UBC9 169 aa9.27□□□□□ -0.93
USP3-203ENST00000538686 CHD7Q9P2D1 2997 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1BA6NDE4 496 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1EA6NEQ0 496 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 KNCNA6PVL3 124 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 NDUFB3O43676 98 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 IGHV1-46P01743 117 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1DP0C7P1 496 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1A1P0DJD3 496 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1CP0DJD4 496 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 IGHV1-8P0DP01 117 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 RBMY1FQ15415 496 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 C9orf139Q6ZV77 190 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 LINC01561Q8N1V8 128 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 SLC25A15Q9Y619 301 aa9.26□□□□□ -0.93
USP3-203ENST00000538686 LAMA2P24043 3122 aaKnown RBP9.26□□□□□ -0.93
USP3-203ENST00000538686 S100A7L2Q5SY68 101 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 ATP5EP2Q5VTU8 51 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 ZGRF1Q86YA3 2104 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 CNEP1R1Q8N9A8 125 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 DNAJC13O75165 2243 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 F8W735 103 aaPredicted RBP9.25□□□□□ -0.93
USP3-203ENST00000538686 CCL4P13236 92 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 UBE2D4Q9Y2X8 147 aa9.25□□□□□ -0.93
USP3-203ENST00000538686 TRAV12-3A0A0B4J271 114 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 BCE1O60756 84 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 EDN2P20800 178 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 CIRBPQ14011 172 aaKnown RBP9.24□□□□□ -0.93
USP3-203ENST00000538686 C16orf92Q96LL3 132 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 DEFB127Q9H1M4 99 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 C16orf95Q9H693 158 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 IGKV3D-7A0A0C4DH55 119 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 Q6ZSV7 163 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 NUP37Q8NFH4 326 aa9.24□□□□□ -0.93
USP3-203ENST00000538686 A0A0J9YXV3 536 aa9.23□□□□□ -0.93
USP3-203ENST00000538686 FAM223BA6NKX1 122 aa9.23□□□□□ -0.93
USP3-203ENST00000538686 FANCD2OSQ96PS1 177 aa9.23□□□□□ -0.93
USP3-203ENST00000538686 KIF25-AS1Q9Y6Z4 181 aa9.23□□□□□ -0.93
USP3-203ENST00000538686 RNASE4P34096 147 aaKnown RBP9.22□□□□□ -0.93
USP3-203ENST00000538686 C22orf24Q9Y442 160 aa9.22□□□□□ -0.93
USP3-203ENST00000538686 GHRHP01286 108 aa9.22□□□□□ -0.93
USP3-203ENST00000538686 LINC00315P59091 139 aa9.22□□□□□ -0.93
USP3-203ENST00000538686 SUMO4Q6EEV6 95 aa9.22□□□□□ -0.93
USP3-203ENST00000538686 BUB1B-PAK6H3BSN5 160 aa9.21□□□□□ -0.93
USP3-203ENST00000538686 IGLV1-47P01700 117 aa9.21□□□□□ -0.93
USP3-203ENST00000538686 CTSGP08311 255 aa9.21□□□□□ -0.93
USP3-203ENST00000538686 ZNF784Q8NCA9 323 aaPredicted RBP9.21□□□□□ -0.93
USP3-203ENST00000538686 MDS2Q8NDY4 140 aa9.21□□□□□ -0.93
USP3-203ENST00000538686 IGLV4-3A0A075B6K6 122 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 ADARB2-AS1A8MUL3 147 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 TMEM178BH3BS89 294 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 XCL1P47992 114 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 ATP5EP56381 51 aaPredicted RBP9.2□□□□□ -0.94
USP3-203ENST00000538686 C20orf203Q8NBC4 194 aa9.2□□□□□ -0.94
USP3-203ENST00000538686 SAP25Q8TEE9 199 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms