RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 LGALS9O00182 355 aa11.94□□□□□ -0.5
CHMP1A-202ENST00000535997 C10orf99Q6UWK7 81 aa11.94□□□□□ -0.5
CHMP1A-202ENST00000535997 TMEM141Q96I45 108 aa11.94□□□□□ -0.5
CHMP1A-202ENST00000535997 PRADC1Q9BSG0 188 aa11.94□□□□□ -0.5
CHMP1A-202ENST00000535997 A0A087WWL8 130 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 G3V4G9 280 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 TSHBP01222 138 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 TP53TG1Q9Y2A0 90 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 SDHAF1A6NFY7 115 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 LGALS1P09382 135 aaKnown RBP11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 PMVKQ15126 192 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 FOXI2Q6ZQN5 318 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 SYT8Q8NBV8 401 aa11.93□□□□□ -0.5
CHMP1A-202ENST00000535997 A0A1B0GWB2 263 aa11.92□□□□□ -0.5
CHMP1A-202ENST00000535997 TIMM17AQ99595 171 aa11.92□□□□□ -0.5
CHMP1A-202ENST00000535997 RIPPLY3P57055 190 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 NRGNQ92686 78 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 ZNF479Q96JC4 524 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 MDFICQ9P1T7 246 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 IGSF10Q6WRI0 2623 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 USP9YO00507 2555 aaPredicted RBP11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 CACNA1AO00555 2505 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 SCGB2A2Q13296 93 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 Q8N1Y9 231 aa11.91□□□□□ -0.5
CHMP1A-202ENST00000535997 TRAV12-2A0A075B6T6 113 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 IGHV1OR15-1A0A075B7D0 117 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 TGFAP01135 160 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 ELANEP08246 267 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 COX6B1P14854 86 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 IGLV4-69A0A075B6H9 119 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 A0A096LNT2 108 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 ZNF815PA8K554 130 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 IGKV3-20P01619 116 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 SYNJ2BPP57105 145 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 RNF152Q8N8N0 203 aa11.9□□□□□ -0.5
CHMP1A-202ENST00000535997 M0QY20 66 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 FAM74A4Q5TZK3 123 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 VPREB3Q9UKI3 123 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 DOPEY2Q9Y3R5 2298 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 MYO18BQ8IUG5 2567 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 C11orf86A6NJI1 115 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 F8W1H4 67 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 HERVK_113P61574 105 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 RPL39P62891 51 aaKnown RBP11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 CD300EQ496F6 205 aaPredicted RBP11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 UBE2E2Q96LR5 201 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 SORL1Q92673 2214 aa11.89□□□□□ -0.51
CHMP1A-202ENST00000535997 HOXA3O43365 443 aaPredicted RBP11.88□□□□□ -0.51
CHMP1A-202ENST00000535997 RRN3P1Q2M238 152 aa11.88□□□□□ -0.51
CHMP1A-202ENST00000535997 SCGB1D4Q6XE38 83 aa11.88□□□□□ -0.51
CHMP1A-202ENST00000535997 SPINK13Q1W4C9 94 aa11.88□□□□□ -0.51
CHMP1A-202ENST00000535997 ZNF876PQ49A33 203 aa11.87□□□□□ -0.51
CHMP1A-202ENST00000535997 TRPT1Q86TN4 253 aaKnown RBP11.87□□□□□ -0.51
CHMP1A-202ENST00000535997 CREBBPQ92793 2442 aa11.87□□□□□ -0.51
CHMP1A-202ENST00000535997 UTP20O75691 2785 aaKnown RBP11.87□□□□□ -0.51
CHMP1A-202ENST00000535997 TMEM238LA0A1B0GVL6 79 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 A6NJY4 79 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 HOXD3P31249 432 aaPredicted RBP11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 ZNF56Q15929 161 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 Q6YL49 198 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 SRSF9Q13242 221 aaKnown RBP eCLIP11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 RHOHQ15669 191 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 MORN3Q6PF18 240 aaPredicted RBP11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 KLHL30-AS1Q8NEE0 82 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 CSMD2Q7Z408 3487 aa11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 ANKRD17O75179 2603 aaKnown RBP11.86□□□□□ -0.51
CHMP1A-202ENST00000535997 ACACBO00763 2458 aa11.85□□□□□ -0.51
CHMP1A-202ENST00000535997 NSUN5P1Q3KNT7 163 aa11.85□□□□□ -0.51
CHMP1A-202ENST00000535997 AMTNQ6UX39 209 aa11.85□□□□□ -0.51
CHMP1A-202ENST00000535997 DEFB104AQ8WTQ1 72 aa11.85□□□□□ -0.51
CHMP1A-202ENST00000535997 ZNF256Q9Y2P7 627 aaPredicted RBP11.85□□□□□ -0.51
CHMP1A-202ENST00000535997 ZANQ9Y493 2812 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 TRGV11A0A075B6L2 103 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 EMP1P54849 157 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 RPL24P83731 157 aaKnown RBP11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 PLEKHB2Q96CS7 222 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 ZNF702PQ9H963 129 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 FSHBP01225 129 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 DUX5Q96PT3 197 aa11.84□□□□□ -0.51
CHMP1A-202ENST00000535997 H3BMG7 143 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 TCTEX1D4Q5JR98 221 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 MAPK1IP1LQ8NDC0 245 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 ZNRF2Q8NHG8 242 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 A0A0J9YY99 117 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 I3L3M4 83 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 UBE2D1P51668 147 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 TMEM170BQ5T4T1 132 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 NFE4Q86UQ8 179 aa11.83□□□□□ -0.52
CHMP1A-202ENST00000535997 MXRA5Q9NR99 2828 aa11.82□□□□□ -0.52
CHMP1A-202ENST00000535997 TEX48A0A1B0GUV7 120 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 P0DMU3 169 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 FAM231AP0DMU4 169 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 FAM231CP0DMU5 169 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 C20orf203Q8NBC4 194 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 WFDC2Q14508 124 aa11.81□□□□□ -0.52
CHMP1A-202ENST00000535997 GAGE13Q4V321 117 aa11.8□□□□□ -0.52
CHMP1A-202ENST00000535997 SLC25A29Q8N8R3 303 aa11.8□□□□□ -0.52
CHMP1A-202ENST00000535997 SPANXB1Q9NS25 103 aaPredicted RBP11.8□□□□□ -0.52
CHMP1A-202ENST00000535997 MRPL16Q9NX20 251 aaKnown RBP11.8□□□□□ -0.52
CHMP1A-202ENST00000535997 PGPEP1Q9NXJ5 209 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms