RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 ZNF738Q8NE65 137 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 OR51A2Q8NGJ7 313 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 OR10D4PQ8NGN7 298 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TNFAIP8L1Q8WVP5 186 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 HIST1H2BAQ96A08 127 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 PTH2Q96A98 100 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CENPNQ96H22 339 aaPredicted RBP1.58□□□□□ -2.16
SYNE1-232ENST00000535081 YPEL2Q96QA6 119 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TP53RKQ96S44 253 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 SEC11CQ9BY50 192 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 TTTY10Q9BZA0 68 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 MED28Q9H204 178 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 CST9LQ9H4G1 147 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 DPH3P1Q9H4G8 78 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 SPANXA1Q9NS26 97 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 COMMD3Q9UBI1 195 aa1.58□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV3-7A0A075B6H7 116 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 IGLV10-54A0A075B6I4 117 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV8-6A0A0B4J262 113 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 LOC107986453A0A1B0GWG9 222 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 ANKRD20A5PA0PJZ0 165 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 SMIM9A6NGZ8 99 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 HMSDA8MTL9 139 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 INMT-MINDY4F8WBC2 141 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 H3BQ85 93 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 M0QXV9 152 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 CORTO00230 105 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 SLC17A3O00476 420 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 GNGT2O14610 69 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PLA2G10O15496 165 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PSCAO43653 123 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PDE6DO43924 150 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 S1PR2O95136 353 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 IGLV3-1P01715 115 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 HLA-AP01891 365 aaKnown RBP1.57□□□□□ -2.16
SYNE1-232ENST00000535081 CTSDP07339 412 aaPredicted RBP1.57□□□□□ -2.16
SYNE1-232ENST00000535081 UBBP0CG47 229 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 C8orf88P0DMB2 117 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 SULT1A3P0DMM9 295 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 SULT1A4P0DMN0 295 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 GZMBP10144 247 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PPP1CCP36873 323 aaKnown RBP1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PSMB2P49721 201 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 OR10A3P58181 314 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 DAD1P61803 113 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 BAXQ07812 192 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 HMGN3Q15651 99 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 KISS1Q15726 138 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 MPV17LQ2QL34 196 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 C12orf74Q32Q52 190 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PIGYQ3MUY2 71 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 ACSM3Q53FZ2 586 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 C1orf194Q5T5A4 169 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 IDNKQ5T6J7 187 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 HIST3H2BBQ8N257 126 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 TTC9CQ8N5M4 171 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 VSTM2AQ8TAG5 236 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 ISOC2Q96AB3 205 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 MRAP2Q96G30 205 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 PYURFQ96I23 114 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 FAM19A4Q96LR4 140 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 C20orf144Q9BQM9 153 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 GINS3Q9BRX5 216 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 FAAP24Q9BTP7 215 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 TAF9BQ9HBM6 251 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 RABAC1Q9UI14 185 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 TPRKBQ9Y3C4 175 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 DNAH6Q9C0G6 4158 aa1.57□□□□□ -2.16
SYNE1-232ENST00000535081 HSPG2P98160 4391 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 DYNC1H1Q14204 4646 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV14DV4A0A0A6YYC5 116 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 TRAV3A0A0B4J244 114 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV1-12A0A0C4DH73 117 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 A0A1B0GTI1 187 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 C9JQL5 133 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 NDUFA4O00483 81 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 GEMIN2O14893 280 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 LYRM1O43325 122 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 GNG7O60262 68 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 SIX6O95475 246 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 CXorf1O96002 111 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 IGKV1D-12P01611 117 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 PRH1P02810 166 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 SMIM17P0DL12 118 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 OR13C7P0DN81 318 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ADCYAP1P18509 176 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 NFYAP23511 347 aaPredicted RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 PSMB9P28065 219 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 ASIPP42127 132 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 AKR1C2P52895 323 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 NDUFA6P56556 154 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 CLDN12P56749 244 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 RBM11P57052 281 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 PIGPP57054 158 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 UBE2KP61086 200 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 SNRPGP62308 76 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 LSM3P62310 102 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 SNRPD3P62318 126 aaKnown RBP1.56□□□□□ -2.16
SYNE1-232ENST00000535081 FABP5Q01469 135 aa1.56□□□□□ -2.16
SYNE1-232ENST00000535081 RHEBQ15382 184 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms