RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 K7EIM0 57 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 COPEO14579 308 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 GEMIN2O14893 280 aaKnown RBP1.81□□□□□ -2.12
CD44-235ENST00000532339 HPGDSO60760 199 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 SH2D1AO60880 128 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 CRYZL1O95825 349 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 IFNGP01579 166 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 CRYBB3P26998 211 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 RBM11P57052 281 aaKnown RBP1.81□□□□□ -2.12
CD44-235ENST00000532339 SELENOWP63302 87 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 PRCDQ00LT1 54 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 HMGN3Q15651 99 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 DNAL1Q4LDG9 190 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 C10orf91Q5T1B1 145 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 RPL13AP3Q6NVV1 102 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 AMTNQ6UX39 209 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 Q6ZTI0 123 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 LYZL2Q7Z4W2 148 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 GDPD1Q8N9F7 314 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 TMEM75Q8N9X5 138 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 SUN5Q8TC36 379 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 TNFAIP8L1Q8WVP5 186 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 ASB17Q8WXJ9 295 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 DIRC1Q969H9 104 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 ADAT3Q96EY9 351 aaPredicted RBP1.81□□□□□ -2.12
CD44-235ENST00000532339 TXNDC17Q9BRA2 123 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 METTL9Q9H1A3 318 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 GTSF1LQ9H1H1 148 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 KCNIP2Q9NS61 270 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 HHLA3Q9XRX5 114 aa1.81□□□□□ -2.12
CD44-235ENST00000532339 IGHV3-64A0A075B6Q5 118 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 A0A0A6YYH2 397 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 A0A0J9YX75 114 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 A0A1B0GU33 70 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 TINCRA0A1B0GVN0 87 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 IGLC7A0M8Q6 106 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 A6NJ64 397 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 RIIAD1A6NNX1 92 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 M0R2Z0 102 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 ARL6IP5O75915 188 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 PSMB3P49720 205 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SULT1A2P50226 295 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 GABARAPL2P60520 117 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 PSME3P61289 254 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SNRPGP62308 76 aaKnown RBP1.8□□□□□ -2.12
CD44-235ENST00000532339 MRPS25P82663 173 aaKnown RBP1.8□□□□□ -2.12
CD44-235ENST00000532339 SMAGPQ0VAQ4 97 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SPINK13Q1W4C9 94 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 HSP90B2PQ58FF3 399 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SFXN4Q6P4A7 337 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 ZNF322Q6U7Q0 402 aaPredicted RBP1.8□□□□□ -2.12
CD44-235ENST00000532339 BAP18Q8IXM2 172 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 EIF4E3Q8N5X7 224 aaKnown RBP1.8□□□□□ -2.12
CD44-235ENST00000532339 TMEM203Q969S6 136 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SMIM19Q96E16 107 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 CPNE2Q96FN4 548 aaPredicted RBP1.8□□□□□ -2.12
CD44-235ENST00000532339 LINC00052Q96N35 136 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 YIPF3Q9GZM5 350 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 SNX12Q9UMY4 172 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 BAIAP2Q9UQB8 552 aa1.8□□□□□ -2.12
CD44-235ENST00000532339 IGKV2-24A0A0C4DH68 120 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 B4DEV8 164 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 H7BYZ3 331 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 BIRC5O15392 142 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 GNG7O60262 68 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 IGLV6-57P01721 117 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 PSMA1P25786 263 aaKnown RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 COX6B2Q6YFQ2 88 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 FAM19A5Q7Z5A7 132 aaPredicted RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 KRTAP13-1Q8IUC0 172 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 OR10AC1Q8NH08 325 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 OR10A6Q8NH74 314 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 MRPL30Q8TCC3 161 aaKnown RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 CMTM5Q96DZ9 223 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 C2orf50Q96LR7 162 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 GNB1LQ9BYB4 327 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 MRPL32Q9BYC8 188 aaKnown RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 OR51V1Q9H2C8 321 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 CMC2Q9NRP2 79 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 SPANXB1Q9NS25 103 aaPredicted RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 IL20Q9NYY1 176 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 FUT9Q9Y231 359 aa1.79□□□□□ -2.12
CD44-235ENST00000532339 CARHSP1Q9Y2V2 147 aaKnown RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 UTP11Q9Y3A2 253 aaKnown RBP1.79□□□□□ -2.12
CD44-235ENST00000532339 TRAV12-2A0A075B6T6 113 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 MUC21A0A0G2JKD1 596 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 TMEM235A6NFC5 223 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 IFNA7P01567 189 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 P0C880 135 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 IFNGR2P38484 337 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 GZMMP51124 257 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 LINC00313P59037 77 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 TSPAN31Q12999 210 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 ACSM3Q53FZ2 586 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 SPINK9Q5DT21 86 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 SAMD13Q5VXD3 122 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 KRTAP5-10Q6L8G5 202 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 HS3ST5Q8IZT8 346 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 ZFAND2AQ8N6M9 145 aa1.78□□□□□ -2.12
CD44-235ENST00000532339 OR8D4Q8NGM9 314 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms