RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IGHV3OR16-12A0A075B7B8 117 aa15.35■□□□□ 0.05
VPS28-212ENST00000530836 C14orf178Q8N769 122 aaPredicted RBP15.35■□□□□ 0.05
VPS28-212ENST00000530836 SPRY2O43597 315 aa15.35■□□□□ 0.05
VPS28-212ENST00000530836 SERF1AO75920 110 aa15.35■□□□□ 0.05
VPS28-212ENST00000530836 POM121L12Q8N7R1 296 aa15.35■□□□□ 0.05
VPS28-212ENST00000530836 GSN-AS1Q9NRJ2 163 aa15.35■□□□□ 0.05
VPS28-212ENST00000530836 RNASE8Q8TDE3 154 aaKnown RBP15.34■□□□□ 0.05
VPS28-212ENST00000530836 A8MZ25 164 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 IGHV4-30-4P0DP06 118 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 TMEM18Q96B42 140 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 C16orf74Q96GX8 76 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 KIF25-AS1Q9Y6Z4 181 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 MUC4Q99102 2169 aa15.33■□□□□ 0.04
VPS28-212ENST00000530836 PPP1R17O96001 155 aa15.32■□□□□ 0.04
VPS28-212ENST00000530836 IQCJQ1A5X6 159 aa15.32■□□□□ 0.04
VPS28-212ENST00000530836 PDZD11Q5EBL8 140 aa15.32■□□□□ 0.04
VPS28-212ENST00000530836 CHCHD1Q96BP2 118 aaKnown RBP15.32■□□□□ 0.04
VPS28-212ENST00000530836 A8MWV9 139 aa15.32■□□□□ 0.04
VPS28-212ENST00000530836 PACRGQ96M98 296 aaPredicted RBP15.32■□□□□ 0.04
VPS28-212ENST00000530836 PRKDCP78527 4128 aaKnown RBP15.32■□□□□ 0.04
VPS28-212ENST00000530836 AZU1P20160 251 aa15.31■□□□□ 0.04
VPS28-212ENST00000530836 LINC00310P59036 64 aa15.31■□□□□ 0.04
VPS28-212ENST00000530836 RRN3P1Q2M238 152 aa15.31■□□□□ 0.04
VPS28-212ENST00000530836 NIT1Q86X76 327 aa15.31■□□□□ 0.04
VPS28-212ENST00000530836 IL17DQ8TAD2 202 aa15.31■□□□□ 0.04
VPS28-212ENST00000530836 PRM2P04554 102 aa15.3■□□□□ 0.04
VPS28-212ENST00000530836 MGPP08493 103 aa15.3■□□□□ 0.04
VPS28-212ENST00000530836 RASL10AQ92737 203 aa15.3■□□□□ 0.04
VPS28-212ENST00000530836 HIST1H2BLQ99880 126 aa15.3■□□□□ 0.04
VPS28-212ENST00000530836 SMIM9A6NGZ8 99 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 IFITM10A6NMD0 228 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 SMKR1H3BMG3 65 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 TNFRSF6BO95407 300 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 NCR2O95944 276 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 LINC00614P0C842 121 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 LINC00315P59091 139 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 DAZ2Q13117 558 aaKnown RBP15.29■□□□□ 0.04
VPS28-212ENST00000530836 PRSS3P2Q8NHM4 247 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 MAP1LC3AQ9H492 121 aa15.29■□□□□ 0.04
VPS28-212ENST00000530836 NUPR1O60356 82 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 NPYP01303 97 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 CRYGDP07320 174 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 FABP4P15090 132 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 AKR1D1P51857 326 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 LGALS9BQ3B8N2 356 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 PRSS47A8MTI9 375 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 HSBP1O75506 76 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 RNASEKQ6P5S7 137 aaKnown RBP15.28■□□□□ 0.04
VPS28-212ENST00000530836 SAMD10Q9BYL1 202 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 JPT2Q9H910 190 aa15.28■□□□□ 0.04
VPS28-212ENST00000530836 A0A087WWL8 130 aa15.27■□□□□ 0.03
VPS28-212ENST00000530836 PMCHP20382 165 aa15.27■□□□□ 0.03
VPS28-212ENST00000530836 RHODO00212 210 aa15.26■□□□□ 0.03
VPS28-212ENST00000530836 FA2HQ7L5A8 372 aa15.26■□□□□ 0.03
VPS28-212ENST00000530836 NRACQ8N912 160 aa15.26■□□□□ 0.03
VPS28-212ENST00000530836 B9D2Q9BPU9 175 aa15.26■□□□□ 0.03
VPS28-212ENST00000530836 C20orf78Q9BR46 151 aa15.26■□□□□ 0.03
VPS28-212ENST00000530836 NXT2Q9NPJ8 142 aaKnown RBP15.26■□□□□ 0.03
VPS28-212ENST00000530836 TRAV26-2A0A0B4J265 109 aa15.25■□□□□ 0.03
VPS28-212ENST00000530836 FAM74A4Q5TZK3 123 aa15.25■□□□□ 0.03
VPS28-212ENST00000530836 AP5S1Q9NUS5 200 aa15.25■□□□□ 0.03
VPS28-212ENST00000530836 F5H697 171 aa15.25■□□□□ 0.03
VPS28-212ENST00000530836 URB1-AS1Q96HZ7 61 aa15.25■□□□□ 0.03
VPS28-212ENST00000530836 AMTP48728 403 aa15.24■□□□□ 0.03
VPS28-212ENST00000530836 ZNF56Q15929 161 aa15.24■□□□□ 0.03
VPS28-212ENST00000530836 OVOL2Q9BRP0 275 aa15.24■□□□□ 0.03
VPS28-212ENST00000530836 LOC389332A0A1B0GUA5 103 aa15.23■□□□□ 0.03
VPS28-212ENST00000530836 GAS8-AS1O95177 125 aa15.23■□□□□ 0.03
VPS28-212ENST00000530836 IFI27P40305 119 aaPredicted RBP15.23■□□□□ 0.03
VPS28-212ENST00000530836 Q6ZWC4 215 aa15.23■□□□□ 0.03
VPS28-212ENST00000530836 EDA2RQ9HAV5 297 aa15.23■□□□□ 0.03
VPS28-212ENST00000530836 MRPL16Q9NX20 251 aaKnown RBP15.23■□□□□ 0.03
VPS28-212ENST00000530836 TRGV1A0A0A0MS02 117 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 PLAC8L1A1L4L8 177 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 H7C1H1 209 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 RS1O15537 224 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 GATA1P15976 413 aaPredicted RBP15.22■□□□□ 0.03
VPS28-212ENST00000530836 CFAP126Q5VTH2 177 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 SUMO4Q6EEV6 95 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 ZFP2Q6ZN57 461 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 OR10D4PQ8NGN7 298 aa15.22■□□□□ 0.03
VPS28-212ENST00000530836 LINC01546A6NGU7 62 aa15.21■□□□□ 0.03
VPS28-212ENST00000530836 CIDEAO60543 219 aa15.21■□□□□ 0.03
VPS28-212ENST00000530836 UFSP1Q6NVU6 142 aa15.21■□□□□ 0.03
VPS28-212ENST00000530836 SBSPONQ8IVN8 264 aa15.21■□□□□ 0.03
VPS28-212ENST00000530836 NOP10Q9NPE3 64 aaKnown RBP15.21■□□□□ 0.03
VPS28-212ENST00000530836 SUMO2P61956 95 aaKnown RBP15.21■□□□□ 0.02
VPS28-212ENST00000530836 Q8N8P6 123 aa15.21■□□□□ 0.02
VPS28-212ENST00000530836 K7EMI3 77 aa15.2■□□□□ 0.02
VPS28-212ENST00000530836 RPL32P62910 135 aaKnown RBP15.2■□□□□ 0.02
VPS28-212ENST00000530836 X6R8D5 127 aa15.2■□□□□ 0.02
VPS28-212ENST00000530836 TRBV6-5A0A0K0K1A5 114 aa15.19■□□□□ 0.02
VPS28-212ENST00000530836 M0QY20 66 aa15.19■□□□□ 0.02
VPS28-212ENST00000530836 DEFB135Q30KP9 77 aa15.19■□□□□ 0.02
VPS28-212ENST00000530836 FAM19A2Q8N3H0 131 aa15.18■□□□□ 0.02
VPS28-212ENST00000530836 OR4C5Q8NGB2 326 aa15.18■□□□□ 0.02
VPS28-212ENST00000530836 SMIM2Q9BVW6 85 aa15.18■□□□□ 0.02
VPS28-212ENST00000530836 ST20Q9HBF5 79 aa15.18■□□□□ 0.02
VPS28-212ENST00000530836 DNAH9Q9NYC9 4486 aa15.17■□□□□ 0.02
VPS28-212ENST00000530836 TRAV4A0A0B4J268 109 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms