RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 EVI2AP22794 236 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 FAM74A4Q5TZK3 123 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 UFSP1Q6NVU6 142 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 KCNIP4Q6PIL6 250 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 AP1S3Q96PC3 154 aa11.47□□□□□ -0.57
LSM1-204ENST00000522515 TRGC1P0CF51 173 aa11.46□□□□□ -0.57
LSM1-204ENST00000522515 RIGQ13278 110 aa11.46□□□□□ -0.57
LSM1-204ENST00000522515 KIF25-AS1Q9Y6Z4 181 aa11.46□□□□□ -0.57
LSM1-204ENST00000522515 DEFB131BA0A096LNP1 70 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 F5H768 121 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 S100PP25815 95 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 FHL2Q14192 279 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 BTF3L4Q96K17 158 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 WWC2-AS2Q96NR7 200 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 TRAV10A0A0B4J240 114 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 A0A1B0GXF2 115 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 CAMPP49913 170 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 LINC00315P59091 139 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 ZFP2Q6ZN57 461 aa11.45□□□□□ -0.58
LSM1-204ENST00000522515 PHLDA1Q8WV24 401 aaPredicted RBP11.45□□□□□ -0.58
LSM1-204ENST00000522515 TRGV4A0A0C4DH28 118 aa11.44□□□□□ -0.58
LSM1-204ENST00000522515 SMIM17P0DL12 118 aa11.44□□□□□ -0.58
LSM1-204ENST00000522515 ATP5L2Q7Z4Y8 100 aa11.44□□□□□ -0.58
LSM1-204ENST00000522515 TRAV9-1A0A075B6T8 112 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 A0A1B0GW15 77 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 RHODO00212 210 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 CIDEAO60543 219 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 HBBP68871 147 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 TMEM88Q6PEY1 159 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 Q6ZSN1 163 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 CBLN2Q8IUK8 224 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 DPH3P1Q9H4G8 78 aa11.43□□□□□ -0.58
LSM1-204ENST00000522515 ELOBQ15370 118 aa11.42□□□□□ -0.58
LSM1-204ENST00000522515 SMIM15Q7Z3B0 74 aa11.42□□□□□ -0.58
LSM1-204ENST00000522515 TMEM191AQ9H0A3 160 aa11.42□□□□□ -0.58
LSM1-204ENST00000522515 MGPP08493 103 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 GATA1P15976 413 aaPredicted RBP11.41□□□□□ -0.58
LSM1-204ENST00000522515 ZNF56Q15929 161 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 MUC7Q8TAX7 377 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 HHLA3Q9XRX5 114 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 TRAV26-1A0A087WT03 109 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 SCO1O75880 301 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 CRYBA4P53673 196 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 SLC25A29Q8N8R3 303 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 SMCO4Q9NRQ5 59 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 PRO0255Q9UI72 69 aa11.41□□□□□ -0.58
LSM1-204ENST00000522515 TGIF2-C20orf24A0A0A6YYL0 155 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 A0A0J9YY99 117 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 F5H697 171 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 AMN1Q8IY45 258 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 GATD1Q8NB37 220 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 VSIG2Q96IQ7 327 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 YPEL4Q96NS1 127 aa11.4□□□□□ -0.58
LSM1-204ENST00000522515 TRBV6-4A0A1B0GX49 114 aa11.39□□□□□ -0.59
LSM1-204ENST00000522515 S100A8P05109 93 aa11.39□□□□□ -0.59
LSM1-204ENST00000522515 RAB4BP61018 213 aa11.39□□□□□ -0.59
LSM1-204ENST00000522515 SLAQ13239 276 aa11.39□□□□□ -0.59
LSM1-204ENST00000522515 ZFAND6Q6FIF0 208 aa11.39□□□□□ -0.59
LSM1-204ENST00000522515 CEMP1Q6PRD7 247 aaPredicted RBP11.39□□□□□ -0.59
LSM1-204ENST00000522515 TRBV24-1A0A075B6N3 115 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 PAX4O43316 350 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 RASL11AQ6T310 242 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 RNF185Q96GF1 192 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 Q9UF83 564 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 DNAH7Q8WXX0 4024 aa11.38□□□□□ -0.59
LSM1-204ENST00000522515 NUPR2A6NF83 97 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 IGLL5B9A064 214 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 K7EQD1 137 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 RAB4AP20338 218 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 FAM104BQ5XKR9 115 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 SUMO4Q6EEV6 95 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 CSMD3Q7Z407 3707 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 TRAV26-2A0A0B4J265 109 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 LOC100131303A0A0U1RQF7 123 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 P0DMU3 169 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 FAM231AP0DMU4 169 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 FAM231CP0DMU5 169 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 TMEM136Q6ZRR5 245 aa11.37□□□□□ -0.59
LSM1-204ENST00000522515 M0QY20 66 aa11.36□□□□□ -0.59
LSM1-204ENST00000522515 RHOHQ15669 191 aa11.36□□□□□ -0.59
LSM1-204ENST00000522515 MRPL51Q4U2R6 128 aaKnown RBP11.35□□□□□ -0.59
LSM1-204ENST00000522515 FAM210BQ96KR6 192 aa11.35□□□□□ -0.59
LSM1-204ENST00000522515 H3BNG1 76 aa11.34□□□□□ -0.59
LSM1-204ENST00000522515 GAS8-AS1O95177 125 aa11.34□□□□□ -0.59
LSM1-204ENST00000522515 GYPEP15421 78 aa11.34□□□□□ -0.59
LSM1-204ENST00000522515 PRADC1Q9BSG0 188 aa11.34□□□□□ -0.59
LSM1-204ENST00000522515 GNB1LQ9BYB4 327 aa11.34□□□□□ -0.59
LSM1-204ENST00000522515 KLK5Q9Y337 293 aaPredicted RBP11.34□□□□□ -0.59
LSM1-204ENST00000522515 SMKR1H3BMG3 65 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 TRBV10-1A0A0K0K1A3 114 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 H7C1H1 209 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 NCR2O95944 276 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 NUDT3O95989 172 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 NEXN-AS1Q8NBZ9 246 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 FRZBQ92765 325 aa11.33□□□□□ -0.6
LSM1-204ENST00000522515 GAGE12JA6NER3 117 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 HLA-DQA1P01909 254 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 GAGE1Q13065 139 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 GAGE4Q13068 117 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 GAGE5Q13069 117 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms