RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CCL4L1Q8NHW4 92 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 H1FXQ92522 213 aaKnown RBP4.38□□□□□ -1.71
LSM1-202ENST00000520286 FMC1Q96HJ9 113 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 IGF2BP2-AS1Q96M15 143 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 GTSF1LQ9H1H1 148 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 OR2D2Q9H210 308 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 APCP25054 2843 aa4.38□□□□□ -1.71
LSM1-202ENST00000520286 TNRC6AQ8NDV7 1962 aaKnown RBP4.38□□□□□ -1.71
LSM1-202ENST00000520286 DOCK11Q5JSL3 2073 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 NCKAP5O14513 1909 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 DNHD1Q96M86 4753 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 ADGRG4Q8IZF6 3080 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 IGLV3-32A0A0A0MS00 114 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 A0A1B0GX78 115 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 A0A1B0GXF2 115 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 M0R135 149 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 ARL14EPLP0DKL9 152 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 HIST1H1EP10412 219 aaKnown RBP4.37□□□□□ -1.71
LSM1-202ENST00000520286 ATP5G2Q06055 141 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 PLCXD2Q0VAA5 305 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 GDF5OSQ5U4N7 250 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 ATP5L2Q7Z4Y8 100 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 LINC00596Q86U02 117 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 BORCS8Q96FH0 119 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 SPANXB1Q9NS25 103 aaPredicted RBP4.37□□□□□ -1.71
LSM1-202ENST00000520286 JPT1Q9UK76 154 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 BOKQ9UMX3 212 aaPredicted RBP4.37□□□□□ -1.71
LSM1-202ENST00000520286 SPCS1Q9Y6A9 102 aa4.37□□□□□ -1.71
LSM1-202ENST00000520286 KIAA1549Q9HCM3 1950 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 NCOA6Q14686 2063 aaPredicted RBP4.36□□□□□ -1.71
LSM1-202ENST00000520286 ALPK2Q86TB3 2170 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.36□□□□□ -1.71
LSM1-202ENST00000520286 TRAV38-1A0A0B4J264 116 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 IGHV1-24A0A0C4DH33 117 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 H3BUT2 72 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 DEFA4P12838 97 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 GNG4P50150 75 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 FGF12P61328 243 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 MEF2CQ06413 473 aaPredicted RBP4.36□□□□□ -1.71
LSM1-202ENST00000520286 CENPWQ5EE01 88 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 BPIFA4PQ86YQ2 179 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 OR4X2Q8NGF9 303 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 OR51H1Q8NH63 302 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 ZNF418Q8TF45 676 aaPredicted RBP4.36□□□□□ -1.71
LSM1-202ENST00000520286 LINC00477Q96M19 166 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 AP1S3Q96PC3 154 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 MRPL16Q9NX20 251 aaKnown RBP4.36□□□□□ -1.71
LSM1-202ENST00000520286 S4R3C0 116 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 CRYBG3Q68DQ2 2970 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 RP1P56715 2156 aa4.36□□□□□ -1.71
LSM1-202ENST00000520286 EML6Q6ZMW3 1958 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 SPENQ96T58 3664 aaKnown RBP4.35□□□□□ -1.71
LSM1-202ENST00000520286 J3QR89 54 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 ESPL1Q14674 2120 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 LTC4SQ16873 150 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 BOD1L2Q8IYS8 172 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 TMEM251Q8N6I4 163 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 FDCSPQ8NFU4 85 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 ITLN2Q8WWU7 325 aaPredicted RBP4.35□□□□□ -1.71
LSM1-202ENST00000520286 CCL17Q92583 94 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 SPTSSAQ969W0 71 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 ZC2HC1AQ96GY0 325 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 WDR54Q9H977 334 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.35□□□□□ -1.71
LSM1-202ENST00000520286 SPG11Q96JI7 2443 aa4.35□□□□□ -1.71
LSM1-202ENST00000520286 NAV3Q8IVL0 2385 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 IGLV3-12A0A075B6K2 115 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 TRAV40A0A0B4J280 105 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 F5H5K5 113 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 F8W1H4 67 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.34□□□□□ -1.71
LSM1-202ENST00000520286 LEPROTL1O95214 131 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 LHBP01229 141 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 IGHV3-7P01780 117 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 FABP2P12104 132 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 DEFB110Q30KQ9 67 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 TIMM23BQ5SRD1 257 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 IBA57Q5T440 356 aaKnown RBP4.34□□□□□ -1.71
LSM1-202ENST00000520286 FAM27BQ5VT28 67 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 IGFL3Q6UXB1 125 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 Q6ZS92 163 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 OOSP2Q86WS3 158 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 TTC9CQ8N5M4 171 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 PATE1Q8WXA2 126 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 MGST2Q99735 147 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 RBM12B-AS1Q9P1G2 102 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 ERG28Q9UKR5 140 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 TRAPPC2LQ9UL33 140 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 SOX21Q9Y651 276 aaPredicted RBP4.34□□□□□ -1.71
LSM1-202ENST00000520286 LINC00312Q9Y6C7 94 aa4.34□□□□□ -1.71
LSM1-202ENST00000520286 SDK2Q58EX2 2172 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 A0A1W2PRE2 83 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 hADV38S2A0JD32 116 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 LRCOL1A6NCL2 159 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 FNDC10F2Z333 226 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 COX6B1P14854 86 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 TCL1AP56279 114 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 EDDM3BP56851 147 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 KLRD1Q13241 179 aa4.33□□□□□ -1.72
LSM1-202ENST00000520286 MOBPQ13875 183 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms