RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 HMSDA8MTL9 139 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 PAGE4O60829 102 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 S100A9P06702 114 aaKnown RBP11.69□□□□□ -0.54
DDX41-217ENST00000515562 ZFP82Q8N141 532 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 C14orf178Q8N769 122 aaPredicted RBP11.69□□□□□ -0.54
DDX41-217ENST00000515562 FAM213BQ8TBF2 198 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 SFT2D1Q8WV19 159 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 TM2D2Q9BX73 214 aa11.69□□□□□ -0.54
DDX41-217ENST00000515562 TMSB15BA0A087X1C1 80 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 A0A0D9SG52 128 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 KANTRA0A1W2PQU2 76 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 M0R381 172 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 PFDN1O60925 122 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 TOR2AQ5JU69 321 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 Q8N814 137 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 MBD3L1Q8WWY6 194 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 SFRP2Q96HF1 295 aa11.68□□□□□ -0.54
DDX41-217ENST00000515562 ZNF471Q9BX82 626 aaPredicted RBP11.68□□□□□ -0.54
DDX41-217ENST00000515562 A0A087WWL8 130 aa11.67□□□□□ -0.54
DDX41-217ENST00000515562 TRAV8-3A0A0A6YYJ7 113 aa11.67□□□□□ -0.54
DDX41-217ENST00000515562 BCL2L11O43521 198 aa11.67□□□□□ -0.54
DDX41-217ENST00000515562 TRBV10-1A0A0K0K1A3 114 aa11.66□□□□□ -0.54
DDX41-217ENST00000515562 EIF5AP63241 154 aaKnown RBP11.66□□□□□ -0.54
DDX41-217ENST00000515562 Q9UF83 564 aa11.66□□□□□ -0.54
DDX41-217ENST00000515562 URGCP-MRPS24S4R325 110 aa11.66□□□□□ -0.54
DDX41-217ENST00000515562 A0A1B0GV50 99 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 SCO2A0A1W2PP80 73 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 CXCL1P09341 107 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 Q8N3U1 123 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 FRZBQ92765 325 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 TMEM70Q9BUB7 260 aa11.65□□□□□ -0.54
DDX41-217ENST00000515562 H2AFB1P0C5Y9 115 aa11.64□□□□□ -0.55
DDX41-217ENST00000515562 DAZ4Q86SG3 579 aaKnown RBP11.64□□□□□ -0.55
DDX41-217ENST00000515562 DAZ3Q9NR90 486 aaKnown RBP11.64□□□□□ -0.55
DDX41-217ENST00000515562 RPL36AP83881 106 aaKnown RBP11.63□□□□□ -0.55
DDX41-217ENST00000515562 Q5VSD8 79 aa11.63□□□□□ -0.55
DDX41-217ENST00000515562 BAGE2Q86Y30 109 aa11.63□□□□□ -0.55
DDX41-217ENST00000515562 RPL36ALQ969Q0 106 aaKnown RBP11.63□□□□□ -0.55
DDX41-217ENST00000515562 MLST8Q9BVC4 326 aa11.63□□□□□ -0.55
DDX41-217ENST00000515562 COX11Q9Y6N1 276 aa11.63□□□□□ -0.55
DDX41-217ENST00000515562 NIT1Q86X76 327 aa11.62□□□□□ -0.55
DDX41-217ENST00000515562 RMI2Q96E14 147 aa11.62□□□□□ -0.55
DDX41-217ENST00000515562 CHCHD7Q9BUK0 85 aa11.62□□□□□ -0.55
DDX41-217ENST00000515562 TRBV7-3A0A075B6L6 115 aa11.61□□□□□ -0.55
DDX41-217ENST00000515562 RAB4BP61018 213 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 UBE2D3P61077 147 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 UBE2D2P62837 147 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 RPL19P84098 196 aaKnown RBP11.6□□□□□ -0.55
DDX41-217ENST00000515562 KCNIP4Q6PIL6 250 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 OR10G8Q8NGN5 311 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 OR10AG1Q8NH19 301 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 MANBALQ9NQG1 85 aa11.6□□□□□ -0.55
DDX41-217ENST00000515562 A0A087WX48 190 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 SNAI2O43623 268 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 C1QBP02746 253 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 OR5AL1P0C617 328 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 WFDC2Q14508 124 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 ELOBQ15370 118 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 ZNF56Q15929 161 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 PRR27Q6MZM9 219 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 TMUB2Q71RG4 321 aa11.59□□□□□ -0.55
DDX41-217ENST00000515562 INAFM2P0DMQ5 153 aa11.58□□□□□ -0.56
DDX41-217ENST00000515562 RPL35P42766 123 aaKnown RBP11.58□□□□□ -0.56
DDX41-217ENST00000515562 RAB5CP51148 216 aa11.58□□□□□ -0.56
DDX41-217ENST00000515562 SPANXN1Q5VSR9 72 aa11.58□□□□□ -0.56
DDX41-217ENST00000515562 EIF5AL1Q6IS14 154 aaKnown RBP11.58□□□□□ -0.56
DDX41-217ENST00000515562 SSBP4Q9BWG4 385 aaPredicted RBP11.58□□□□□ -0.56
DDX41-217ENST00000515562 TRAV1-1A0A0B4J248 108 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 TEX46H3BTG2 121 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.57□□□□□ -0.56
DDX41-217ENST00000515562 C11orf52Q96A22 123 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 GNG13Q9P2W3 67 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 KLK12Q9UKR0 248 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 FAT1Q14517 4588 aa11.57□□□□□ -0.56
DDX41-217ENST00000515562 FAM229AH3BQW9 127 aa11.56□□□□□ -0.56
DDX41-217ENST00000515562 LECT2O14960 151 aa11.56□□□□□ -0.56
DDX41-217ENST00000515562 SMR3BP02814 79 aaPredicted RBP11.56□□□□□ -0.56
DDX41-217ENST00000515562 HAMPP81172 84 aa11.56□□□□□ -0.56
DDX41-217ENST00000515562 IGKV2D-24A0A075B6R9 120 aa11.55□□□□□ -0.56
DDX41-217ENST00000515562 TRBV6-8A0A0A6YYG3 113 aa11.55□□□□□ -0.56
DDX41-217ENST00000515562 NEXN-AS1Q8NBZ9 246 aa11.55□□□□□ -0.56
DDX41-217ENST00000515562 UBE2WQ96B02 151 aa11.55□□□□□ -0.56
DDX41-217ENST00000515562 AP1S3Q96PC3 154 aa11.55□□□□□ -0.56
DDX41-217ENST00000515562 SMIM17P0DL12 118 aa11.54□□□□□ -0.56
DDX41-217ENST00000515562 Q0VG73 95 aa11.54□□□□□ -0.56
DDX41-217ENST00000515562 CENPWQ5EE01 88 aa11.54□□□□□ -0.56
DDX41-217ENST00000515562 BAALCQ8WXS3 180 aa11.54□□□□□ -0.56
DDX41-217ENST00000515562 DERL1Q9BUN8 251 aa11.54□□□□□ -0.56
DDX41-217ENST00000515562 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.53□□□□□ -0.56
DDX41-217ENST00000515562 MUC21A0A0G2JKD1 596 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 MUC21A0A140T8X8 626 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 RBFOX3A6NFN3 312 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 F5H697 171 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 PKIAP61925 76 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 CCL20P78556 96 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 ATRAIDQ6UW56 229 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 Q6ZSA8 131 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 Q8N976 141 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 SMIM12Q96EX1 92 aa11.53□□□□□ -0.56
DDX41-217ENST00000515562 VPS13BQ7Z7G8 4022 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms