RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IGLV11-55A0A075B6I3 123 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 TMEM89A2RUT3 159 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 CCDC179H3BU77 68 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 PATE2Q6UY27 113 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 A0A0J9YY99 117 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 NCR3O14931 201 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 Q6ZR03 302 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 TPSG1Q9NRR2 321 aa8.66□□□□□ -1.02
LIMCH1-217ENST00000512946 TRBV27A0A0K0K1C4 114 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 HRCT1Q6UXD1 115 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 RGPD4Q7Z3J3 1758 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 K7EIM0 57 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 MIFP14174 115 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 CCL18P55774 89 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 NEXN-AS1Q8NBZ9 246 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 COL4A1P02462 1669 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 TP53BP1Q12888 1972 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 TNRC6AQ8NDV7 1962 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 MRPS12O15235 138 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 LINC00694P0DN24 101 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 PLA2G2EQ9NZK7 142 aa8.65□□□□□ -1.02
LIMCH1-217ENST00000512946 CREBBPQ92793 2442 aa8.65□□□□□ -1.03
LIMCH1-217ENST00000512946 LST1O00453 97 aa8.65□□□□□ -1.03
LIMCH1-217ENST00000512946 SEM1Q6ZVN7 128 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 ODF3Q96PU9 254 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 SBF2Q86WG5 1849 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 Q6ZQT7 251 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 ZNF831Q5JPB2 1677 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 UBR3Q6ZT12 1888 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 TRIAP1O43715 76 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 EIF4EBP1Q13541 118 aaPredicted RBP8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 C14orf177Q52M58 125 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 NRACQ8N912 160 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 CLUHP3Q96NS8 147 aa8.64□□□□□ -1.03
LIMCH1-217ENST00000512946 MCM3APO60318 1980 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 PRO0628Q9UI54 55 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 HEATR5AQ86XA9 2040 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 XGP55808 180 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 LINC00308Q8TCZ7 52 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 RGPD3A6NKT7 1758 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 KIAA2026Q5HYC2 2103 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 LOXL1Q08397 574 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 ZNRD1Q9P1U0 126 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 CEP350Q5VT06 3117 aa8.63□□□□□ -1.03
LIMCH1-217ENST00000512946 CTSGP08311 255 aa8.62□□□□□ -1.03
LIMCH1-217ENST00000512946 MLST8Q9BVC4 326 aa8.62□□□□□ -1.03
LIMCH1-217ENST00000512946 MED12Q93074 2177 aa8.62□□□□□ -1.03
LIMCH1-217ENST00000512946 TMEM223A0PJW6 202 aa8.62□□□□□ -1.03
LIMCH1-217ENST00000512946 UBE2D2P62837 147 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 ZMAT4Q9H898 229 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 Q0VFX4 171 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 RSPO1Q2MKA7 263 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 ARTNQ5T4W7 220 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 LYPD6Q86Y78 171 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 PI4KAP42356 2102 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 SDK2Q58EX2 2172 aa8.61□□□□□ -1.03
LIMCH1-217ENST00000512946 K7ENP7 123 aa8.6□□□□□ -1.03
LIMCH1-217ENST00000512946 RUSC1-AS1Q66K80 236 aa8.6□□□□□ -1.03
LIMCH1-217ENST00000512946 MBD6Q96DN6 1003 aa8.6□□□□□ -1.03
LIMCH1-217ENST00000512946 C11orf1Q9H5F2 150 aa8.6□□□□□ -1.03
LIMCH1-217ENST00000512946 PATJQ8NI35 1801 aa8.6□□□□□ -1.03
LIMCH1-217ENST00000512946 A0A096LPF7 62 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 GPHB5Q86YW7 130 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 HHLA3Q9XRX5 114 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 PYGO1Q9Y3Y4 419 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 ZNF22P17026 224 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 WT1P19544 449 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 CCKP06307 115 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 FAM19A5Q7Z5A7 132 aaPredicted RBP8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 ZNF524Q96C55 264 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 TAF1LQ8IZX4 1826 aa8.59□□□□□ -1.03
LIMCH1-217ENST00000512946 C9orf66Q5T8R8 295 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 PRO0255Q9UI72 69 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 VPREB3Q9UKI3 123 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 A0A0J9YX75 114 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 U3KQK5 164 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 CADP27708 2225 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 ZFAND2AQ8N6M9 145 aa8.58□□□□□ -1.04
LIMCH1-217ENST00000512946 IGFL3Q6UXB1 125 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 NRGNQ92686 78 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 SNURFQ9Y675 71 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 POLR2AP24928 1970 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 DHRS4-AS1Q9P1J3 65 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 IGLV10-54A0A075B6I4 117 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 TMEM263Q8WUH6 116 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 PRORYQ9H606 182 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 LOC285556D6RIA3 1793 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 IGHV7-81A0A0B4J1V7 117 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 IGHV3-30P01768 117 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 IGHV3-30-5P0DP03 117 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 WFDC10AQ9H1F0 79 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 UBE2D4Q9Y2X8 147 aa8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 NYNRINQ9P2P1 1898 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-217ENST00000512946 IGHV4OR15-8A0A075B7B6 117 aa8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 A0A087WW49 117 aa8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 DEFB112Q30KQ8 113 aa8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 YPEL4Q96NS1 127 aa8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 COL5A3P25940 1745 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 RALGAPA2Q2PPJ7 1873 aa8.56□□□□□ -1.04
LIMCH1-217ENST00000512946 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms