RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 WFDC2Q14508 124 aa13.86□□□□□ -0.19
SQSTM1-210ENST00000506042 ZFP82Q8N141 532 aa13.86□□□□□ -0.19
SQSTM1-210ENST00000506042 AQP10Q96PS8 301 aa13.86□□□□□ -0.19
SQSTM1-210ENST00000506042 IGKV3D-20A0A0C4DH25 116 aa13.85□□□□□ -0.19
SQSTM1-210ENST00000506042 RNF222A6NCQ9 220 aa13.85□□□□□ -0.19
SQSTM1-210ENST00000506042 PEX7O00628 323 aa13.85□□□□□ -0.19
SQSTM1-210ENST00000506042 DNLZQ5SXM8 178 aa13.85□□□□□ -0.19
SQSTM1-210ENST00000506042 FAM162BQ5T6X4 162 aa13.85□□□□□ -0.19
SQSTM1-210ENST00000506042 ARMS2P0C7Q2 107 aa13.84□□□□□ -0.19
SQSTM1-210ENST00000506042 FMC1Q96HJ9 113 aa13.84□□□□□ -0.19
SQSTM1-210ENST00000506042 CTXND1A0A1B0GTU2 59 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 TMEM262E9PQX1 116 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 IGLV2-8P01709 118 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 Q86TA4 180 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 Q8N3U1 123 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 C14orf178Q8N769 122 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 TCEAL7Q9BRU2 100 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 SAMD10Q9BYL1 202 aa13.83□□□□□ -0.2
SQSTM1-210ENST00000506042 TRAV34A0A0B4J273 112 aa13.82□□□□□ -0.2
SQSTM1-210ENST00000506042 SFRP2Q96HF1 295 aa13.82□□□□□ -0.2
SQSTM1-210ENST00000506042 TRBV7-3A0A075B6L6 115 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 A6NHS1 94 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 KRBOX1C9JBD0 128 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 M0R036 132 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 M0R381 172 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 IFITM3Q01628 133 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 TMEM97Q5BJF2 176 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 AKR1C8PQ5T2L2 129 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 UFSP1Q6NVU6 142 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 MED28Q9H204 178 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 VPS13BQ7Z7G8 4022 aa13.81□□□□□ -0.2
SQSTM1-210ENST00000506042 UBE2G2P60604 165 aa13.8□□□□□ -0.2
SQSTM1-210ENST00000506042 STOML3Q8TAV4 291 aa13.8□□□□□ -0.2
SQSTM1-210ENST00000506042 A0A087WWL8 130 aa13.79□□□□□ -0.2
SQSTM1-210ENST00000506042 ATRAIDQ6UW56 229 aa13.79□□□□□ -0.2
SQSTM1-210ENST00000506042 JPT2Q9H910 190 aa13.79□□□□□ -0.2
SQSTM1-210ENST00000506042 FAT1Q14517 4588 aa13.78□□□□□ -0.2
SQSTM1-210ENST00000506042 SH2D1AO60880 128 aa13.78□□□□□ -0.2
SQSTM1-210ENST00000506042 LINC01620Q4KN68 170 aa13.78□□□□□ -0.2
SQSTM1-210ENST00000506042 GRIFINA4D1Z8 144 aa13.77□□□□□ -0.21
SQSTM1-210ENST00000506042 COX8CQ7Z4L0 72 aa13.77□□□□□ -0.21
SQSTM1-210ENST00000506042 CIRBP-AS1Q8TBR5 109 aa13.77□□□□□ -0.21
SQSTM1-210ENST00000506042 ALG5Q9Y673 324 aa13.77□□□□□ -0.21
SQSTM1-210ENST00000506042 MYCBP2O75592 4640 aa13.77□□□□□ -0.21
SQSTM1-210ENST00000506042 TRBV6-8A0A0A6YYG3 113 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 ANGP03950 147 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 RAB4BP61018 213 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 ZNF56Q15929 161 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 MIAQ16674 131 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 LINC01559Q495D7 138 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 ZC2HC1AQ96GY0 325 aa13.76□□□□□ -0.21
SQSTM1-210ENST00000506042 FAM74A7A6NL05 159 aa13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 S100A9P06702 114 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 UBE2D3P61077 147 aa13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 RPL37AP61513 92 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 UBE2D2P62837 147 aa13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 DGAT2L7PQ6IED9 249 aa13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 CHCHD5Q9BSY4 110 aa13.75□□□□□ -0.21
SQSTM1-210ENST00000506042 C15orf54Q8N8G6 183 aa13.74□□□□□ -0.21
SQSTM1-210ENST00000506042 OR10G8Q8NGN5 311 aa13.74□□□□□ -0.21
SQSTM1-210ENST00000506042 ZNF471Q9BX82 626 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-210ENST00000506042 PLA2G2DQ9UNK4 145 aa13.74□□□□□ -0.21
SQSTM1-210ENST00000506042 TMSB15BA0A087X1C1 80 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 TRBV6-1A0A0K0K1D8 114 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 HLA-DQA1P01909 254 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 GIPP09681 153 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 SMIM17P0DL12 118 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 AKR1C3P42330 323 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 FHITP49789 147 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 ZNF674Q2M3X9 581 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 CST9LP1Q5W188 147 aa13.73□□□□□ -0.21
SQSTM1-210ENST00000506042 FXYD6-FXYD2A0A087WZ82 144 aa13.72□□□□□ -0.21
SQSTM1-210ENST00000506042 MAP1LC3B2A6NCE7 125 aa13.72□□□□□ -0.21
SQSTM1-210ENST00000506042 RPL7L1Q6DKI1 246 aaKnown RBP13.72□□□□□ -0.21
SQSTM1-210ENST00000506042 MAP1LC3BQ9GZQ8 125 aa13.72□□□□□ -0.21
SQSTM1-210ENST00000506042 Q9UF83 564 aa13.72□□□□□ -0.21
SQSTM1-210ENST00000506042 PTTG1O95997 202 aa13.71□□□□□ -0.21
SQSTM1-210ENST00000506042 F5H697 171 aa13.7□□□□□ -0.22
SQSTM1-210ENST00000506042 LTAP01374 205 aa13.7□□□□□ -0.22
SQSTM1-210ENST00000506042 CXCL1P09341 107 aa13.7□□□□□ -0.22
SQSTM1-210ENST00000506042 SPANXN1Q5VSR9 72 aa13.7□□□□□ -0.22
SQSTM1-210ENST00000506042 A0A0D9SG52 128 aa13.69□□□□□ -0.22
SQSTM1-210ENST00000506042 USP17L23D6RBM5 183 aa13.69□□□□□ -0.22
SQSTM1-210ENST00000506042 PFDN1O60925 122 aa13.69□□□□□ -0.22
SQSTM1-210ENST00000506042 CRIP1P50238 77 aa13.69□□□□□ -0.22
SQSTM1-210ENST00000506042 RPL19P84098 196 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-210ENST00000506042 TRBV25-1A0A075B6N4 114 aa13.68□□□□□ -0.22
SQSTM1-210ENST00000506042 ZNF726P1Q15940 193 aa13.68□□□□□ -0.22
SQSTM1-210ENST00000506042 CLRN3Q8NCR9 226 aa13.68□□□□□ -0.22
SQSTM1-210ENST00000506042 MPV17L2Q567V2 206 aa13.67□□□□□ -0.22
SQSTM1-210ENST00000506042 ENHOQ6UWT2 76 aa13.67□□□□□ -0.22
SQSTM1-210ENST00000506042 H7C1H1 209 aa13.66□□□□□ -0.22
SQSTM1-210ENST00000506042 DNAJC30Q96LL9 226 aa13.66□□□□□ -0.22
SQSTM1-210ENST00000506042 AP1S3Q96PC3 154 aa13.66□□□□□ -0.22
SQSTM1-210ENST00000506042 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-210ENST00000506042 C9orf163Q8N9P6 203 aa13.65□□□□□ -0.22
SQSTM1-210ENST00000506042 NEXN-AS1Q8NBZ9 246 aa13.65□□□□□ -0.22
SQSTM1-210ENST00000506042 AP5S1Q9NUS5 200 aa13.65□□□□□ -0.22
SQSTM1-210ENST00000506042 OR5AL1P0C617 328 aa13.63□□□□□ -0.23
SQSTM1-210ENST00000506042 PRR27Q6MZM9 219 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms