RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 CFAP47Q6ZTR5 3102 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 TRRAPQ9Y4A5 3859 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 M0QZK8 103 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 HBDP02042 147 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 RPL7P18124 248 aaKnown RBP-0.32□□□□□ -2.46
SMC4-227ENST00000497984 SRP9P49458 86 aaKnown RBP-0.32□□□□□ -2.46
SMC4-227ENST00000497984 POLR2HP52434 150 aaKnown RBP-0.32□□□□□ -2.46
SMC4-227ENST00000497984 IDO2Q6ZQW0 420 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 OTOSQ8NHW6 89 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 THEM6Q8WUY1 208 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 TRAPPC2LQ9UL33 140 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 DNAH11Q96DT5 4516 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 F8P00451 2351 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 BLMP54132 1417 aaPredicted RBP-0.32□□□□□ -2.46
SMC4-227ENST00000497984 DNAH8Q96JB1 4490 aa-0.32□□□□□ -2.46
SMC4-227ENST00000497984 VPS13DQ5THJ4 4388 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 PRUNE2Q8WUY3 3088 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 SPENQ96T58 3664 aaKnown RBP-0.33□□□□□ -2.46
SMC4-227ENST00000497984 IGHV1-24A0A0C4DH33 117 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 GNG10P50151 68 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 LELP1Q5T871 98 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 BRK1Q8WUW1 75 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 NAT14Q8WUY8 206 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 DSCR8Q96T75 97 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 U3KQA8 63 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 DNAH17Q9UFH2 4485 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 CADP27708 2225 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 FRYLO94915 3013 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 ROCK1Q13464 1354 aa-0.33□□□□□ -2.46
SMC4-227ENST00000497984 VCANP13611 3396 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 PCNTO95613 3336 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 HTTP42858 3142 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 ADCYAP1P18509 176 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 PTPRGP23470 1445 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 CKS2P33552 79 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 OR4S1Q8NGB4 309 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 SPRR2FQ96RM1 72 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 PCBD2Q9H0N5 130 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 MKI67P46013 3256 aaKnown RBP-0.34□□□□□ -2.46
SMC4-227ENST00000497984 ATMQ13315 3056 aa-0.34□□□□□ -2.46
SMC4-227ENST00000497984 COL14A1Q05707 1796 aaKnown RBP-0.34□□□□□ -2.46
SMC4-227ENST00000497984 RBBP6Q7Z6E9 1792 aaKnown RBP-0.34□□□□□ -2.46
SMC4-227ENST00000497984 PTPRZ1P23471 2315 aaPredicted RBP-0.35□□□□□ -2.46
SMC4-227ENST00000497984 A2MP01023 1474 aa-0.35□□□□□ -2.46
SMC4-227ENST00000497984 SPTA1P02549 2419 aa-0.35□□□□□ -2.46
SMC4-227ENST00000497984 TRBV10-1A0A0K0K1A3 114 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 C9JAW5 83 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 E5RI56 91 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 TFF1P04155 84 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 RPL22P35268 128 aaKnown RBP-0.35□□□□□ -2.47
SMC4-227ENST00000497984 PPP1R2P3Q6NXS1 205 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 UNQ5815/PRO19632Q6UWF5 114 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 PRR15LQ9BU68 103 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 DNAH10Q8IVF4 4471 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 DNAH9Q9NYC9 4486 aa-0.35□□□□□ -2.47
SMC4-227ENST00000497984 KIAA1549LQ6ZVL6 1849 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 SOGA1O94964 1423 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 VPS13CQ709C8 3753 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 C10orf142B7Z368 130 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 E7EQ34 232 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 UQCRQO14949 82 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 PFDN1O60925 122 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 OR2H2O95918 312 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 FAM107AO95990 144 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 SLC25A5P05141 298 aaKnown RBP-0.36□□□□□ -2.47
SMC4-227ENST00000497984 PYYP10082 97 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 POLR2JP52435 117 aaKnown RBP-0.36□□□□□ -2.47
SMC4-227ENST00000497984 RBM3P98179 157 aaKnown RBP-0.36□□□□□ -2.47
SMC4-227ENST00000497984 KRTAP6-2Q3LI66 62 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 ATPIF1Q9UII2 106 aa-0.36□□□□□ -2.47
SMC4-227ENST00000497984 URB1O60287 2271 aaKnown RBP-0.36□□□□□ -2.47
SMC4-227ENST00000497984 AKAP9Q99996 3911 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.37□□□□□ -2.471e-8■■■■■ 101.8
SMC4-227ENST00000497984 TEX49A0A1B0GTD5 131 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 CXorf51AA0A1B0GTR3 108 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 SDC4P31431 198 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 ELOF1P60002 83 aaKnown RBP-0.37□□□□□ -2.47
SMC4-227ENST00000497984 LSM3P62310 102 aaKnown RBP-0.37□□□□□ -2.47
SMC4-227ENST00000497984 EMX2Q04743 252 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 FAM213BQ8TBF2 198 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 TMEM141Q96I45 108 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 SPTAN1Q13813 2472 aaKnown RBP-0.37□□□□□ -2.47
SMC4-227ENST00000497984 SMG1Q96Q15 3661 aaKnown RBP-0.37□□□□□ -2.47
SMC4-227ENST00000497984 PDE4DIPQ5VU43 2346 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 DNAH12Q6ZR08 3092 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 VPS13AQ96RL7 3174 aa-0.37□□□□□ -2.47
SMC4-227ENST00000497984 NBASA2RRP1 2371 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 WDR97A6NE52 1622 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 PI4KAP42356 2102 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 CSPG4Q6UVK1 2322 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 PTPRQQ9UMZ3 2332 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 RANBP2P49792 3224 aaKnown RBP-0.38□□□□□ -2.47
SMC4-227ENST00000497984 DNAH14Q0VDD8 3507 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 USP34Q70CQ2 3546 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 TRAV17A0A0B4J275 112 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 F2Z2F3 143 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 TCRAP04437 139 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 MT1BP07438 61 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 PCBD1P61457 104 aa-0.38□□□□□ -2.47
SMC4-227ENST00000497984 COX6A2Q02221 97 aa-0.38□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms