RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 Q8NAQ8 132 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 TM2D3Q9BRN9 247 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 NBEAL1Q6ZS30 2694 aa6.94□□□□□ -1.3
USP54-214ENST00000492357 PRSS47A8MTI9 375 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 K7EMI3 77 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 CRYGDP07320 174 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 RAB4AP20338 218 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 EVI2AP22794 236 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 RPL32P62910 135 aaKnown RBP6.93□□□□□ -1.3
USP54-214ENST00000492357 Q0VG73 95 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 SLAQ13239 276 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 COA6Q5JTJ3 125 aaKnown RBP6.93□□□□□ -1.3
USP54-214ENST00000492357 MSRB1Q9NZV6 116 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 MUC4Q99102 2169 aa6.93□□□□□ -1.3
USP54-214ENST00000492357 NHLRC4P0CG21 123 aaPredicted RBP6.92□□□□□ -1.3
USP54-214ENST00000492357 SPART-AS1P0CW21 52 aa6.92□□□□□ -1.3
USP54-214ENST00000492357 LINC00315P59091 139 aa6.92□□□□□ -1.3
USP54-214ENST00000492357 MRPL51Q4U2R6 128 aaKnown RBP6.92□□□□□ -1.3
USP54-214ENST00000492357 UFSP1Q6NVU6 142 aa6.92□□□□□ -1.3
USP54-214ENST00000492357 B9D2Q9BPU9 175 aa6.92□□□□□ -1.3
USP54-214ENST00000492357 C20orf78Q9BR46 151 aa6.92□□□□□ -1.3
USP54-214ENST00000492357 ALKBH7Q9BT30 221 aaPredicted RBP6.92□□□□□ -1.3
USP54-214ENST00000492357 TRGV1A0A0A0MS02 117 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 IGHV4-28A0A0C4DH34 117 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 TRBV10-1A0A0K0K1A3 114 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 TRBV6-5A0A0K0K1A5 114 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 LOC105371267A0A1B0GV96 52 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 TCAPO15273 167 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BKO60814 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 IGHV3-53P01767 116 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BJP06899 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BOP23527 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 CKS2P33552 79 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BBP33778 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BDP58876 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BCP62807 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST2H2BEQ16778 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.91□□□□□ -1.3
USP54-214ENST00000492357 CFAP126Q5VTH2 177 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 AMN1Q8IY45 258 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 C14orf178Q8N769 122 aaPredicted RBP6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BHQ93079 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 RNF185Q96GF1 192 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 DNAJC30Q96LL9 226 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BNQ99877 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 HIST1H2BMQ99879 126 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 ZMAT4Q9H898 229 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 NOP10Q9NPE3 64 aaKnown RBP6.91□□□□□ -1.3
USP54-214ENST00000492357 NOTCH1P46531 2555 aa6.91□□□□□ -1.3
USP54-214ENST00000492357 LINC01549A6NIU2 74 aa6.9□□□□□ -1.3
USP54-214ENST00000492357 OR4C5Q8NGB2 326 aa6.9□□□□□ -1.3
USP54-214ENST00000492357 PRELID3AQ96N28 172 aa6.9□□□□□ -1.3
USP54-214ENST00000492357 DKK2Q9UBU2 259 aa6.9□□□□□ -1.3
USP54-214ENST00000492357 TRGV2A0A075B6R0 118 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 MUC21A0A0G2JKD1 596 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 MUC21A0A140T8X8 626 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 TRBV6-4A0A1B0GX49 114 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 D6R8Y8 96 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 S100A6P06703 90 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 ESDP10768 282 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 SRIP30626 198 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 DEFB121Q5J5C9 76 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 Q6ZTI0 123 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 C18orf32Q8TCD1 76 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 NXT2Q9NPJ8 142 aaKnown RBP6.89□□□□□ -1.31
USP54-214ENST00000492357 MRPL16Q9NX20 251 aaKnown RBP6.89□□□□□ -1.31
USP54-214ENST00000492357 DNAH3Q8TD57 4116 aa6.89□□□□□ -1.31
USP54-214ENST00000492357 M0QY20 66 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 PMCHP20382 165 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 G0S2P27469 103 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 ZNF56Q15929 161 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 LCE2CQ5TA81 110 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 FAM222AQ5U5X8 452 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 SBSPONQ8IVN8 264 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 MRAPQ8TCY5 172 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 CHCHD1Q96BP2 118 aaKnown RBP6.88□□□□□ -1.31
USP54-214ENST00000492357 PACRGQ96M98 296 aaPredicted RBP6.88□□□□□ -1.31
USP54-214ENST00000492357 MAP1LC3AQ9H492 121 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 NIT2Q9NQR4 276 aa6.88□□□□□ -1.31
USP54-214ENST00000492357 LINC01546A6NGU7 62 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 F5H697 171 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 TNFRSF6BO95407 300 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 ATP5G1P05496 136 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 MGPP08493 103 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 GATA1P15976 413 aaPredicted RBP6.87□□□□□ -1.31
USP54-214ENST00000492357 DAD1P61803 113 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 SUMO2P61956 95 aaKnown RBP6.87□□□□□ -1.31
USP54-214ENST00000492357 FAM74A4Q5TZK3 123 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 SUMO4Q6EEV6 95 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 NRACQ8N912 160 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 CMYA5Q8N3K9 4069 aa6.87□□□□□ -1.31
USP54-214ENST00000492357 A0A087WWL8 130 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 TRBV27A0A0K0K1C4 114 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 GAGE12BA1L429 117 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 C5orf52A6NGY3 159 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 H3BNG1 76 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 GAGE7O76087 117 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 PRM2P04554 102 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 GAGE12FP0CL80 117 aa6.86□□□□□ -1.31
USP54-214ENST00000492357 GAGE12GP0CL81 117 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms