RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KTN1-AS1Q86SY8 53 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SBSPONQ8IVN8 264 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TEX29Q8N6K0 151 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TMEM75Q8N9X5 138 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 C18orf32Q8TCD1 76 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 MYOZ3Q8TDC0 251 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 MBD3L1Q8WWY6 194 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 PSMF1Q92530 271 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 BORCS7Q96B45 105 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 MS4A6EQ96DS6 147 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 LINC01600Q96MT4 127 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 PRELID3AQ96N28 172 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ODF3Q96PU9 254 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 DSCR8Q96T75 97 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SLC25A21Q9BQT8 299 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 PBDC1Q9BVG4 233 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TMEM147Q9BVK8 224 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 TMEM191AQ9H0A3 160 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 AGPAT4-IT1Q9H0P7 198 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 DPH3P1Q9H4G8 78 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ST20Q9HBF5 79 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 PCTPQ9UKL6 214 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 ANAPC10Q9UM13 185 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 LSM2Q9Y333 95 aaKnown RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 TPRKBQ9Y3C4 175 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 SOX21Q9Y651 276 aaPredicted RBP0.64□□□□□ -2.31
SMC4-220ENST00000488017 DSPPQ9NZW4 1301 aa0.64□□□□□ -2.31
SMC4-220ENST00000488017 RP1L1Q8IWN7 2480 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 ALPK2Q86TB3 2170 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 MED12Q93074 2177 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 MED13Q9UHV7 2174 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TNRC6CQ9HCJ0 1690 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 TRBV19A0A075B6N1 114 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TRAV12-2A0A075B6T6 113 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TRBV6-7A0A0A0MS04 114 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 IGHV3-73A0A0B4J1V6 119 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 IGKV1-9A0A0C4DH69 117 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 A0A0G2JND7 137 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TEX50A0A1B0GTY4 177 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TLCD2A6NGC4 264 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 A6NN06 94 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 RIIAD1A6NNX1 92 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ZNF705FA8MVS1 300 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 C10orf142B7Z368 130 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 UMAD1C9J7I0 102 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 F8W1H4 67 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 H3BMG7 143 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 H3BUT2 72 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 LST1O00453 97 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 DPM2O94777 84 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 IGKV1-5P01602 117 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 IGHV3-7P01780 117 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 MT-ND6P03923 174 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 CD3DP04234 171 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 TCRAP04437 139 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 IL5P05113 134 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 SRP19P09132 144 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 CD7P09564 240 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ZNF705DP0CH99 300 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 ZNF705BP0CI00 300 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 HLA-DRB4P13762 266 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 COX7CP15954 63 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 RPL22P35268 128 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 PI4KAP42356 2102 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 GUCA1AP43080 201 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 PSMB3P49720 205 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 DAPP51397 102 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ZNF80P51504 273 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 EFNA4P52798 201 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 FKBP1AP62942 108 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 ZNF90Q03938 601 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 MSMO1Q15800 293 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 MPV17LQ2QL34 196 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 LGALS9BQ3B8N2 356 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 VMA21Q3ZAQ7 101 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ETDBQ3ZM63 59 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 C9orf153Q5TBE3 101 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 CFAP126Q5VTH2 177 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 DPPA3Q6W0C5 159 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 Q6ZS49 121 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 Q6ZSA8 131 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 PHF5AQ7RTV0 110 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 TEN1Q86WV5 123 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ANKRD29Q8N6D5 301 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 OR4X2Q8NGF9 303 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 OR8B3Q8NGG8 313 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 OR10AG1Q8NH19 301 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 SGMS2Q8NHU3 365 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 PPTC7Q8NI37 304 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 VSTM2AQ8TAG5 236 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 C10orf105Q8TEF2 133 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 BRK1Q8WUW1 75 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 FGF13Q92913 245 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 GNPNAT1Q96EK6 184 aaPredicted RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 S100A16Q96FQ6 103 aaKnown RBP0.63□□□□□ -2.31
SMC4-220ENST00000488017 RTL8AQ9BWD3 113 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 ULBP3Q9BZM4 244 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 COMMD5Q9GZQ3 224 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 SLC35B3Q9H1N7 401 aa0.63□□□□□ -2.31
SMC4-220ENST00000488017 C11orf68Q9H3H3 251 aaKnown RBP0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms