RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 C7orf77A4D0Y5 90 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 MAP1LC3B2A6NCE7 125 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 RBFOX3A6NFN3 312 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 ZNF705GA8MUZ8 300 aaPredicted RBP2.56□□□□□ -2
PTCD3-216ENST00000487043 HSBP1L1C9JCN9 74 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 M0R036 132 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 COX7A2P2O60397 106 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 CXorf1O96002 111 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 P01737 135 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 IL4P05112 153 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 C8orf88P0DMB2 117 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 S100A7P31151 101 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 PSMB3P49720 205 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 NDUFA6P56556 154 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 TAS2R45P59539 299 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 GUK1Q16774 197 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 C10orf113Q5VZT2 155 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 SPATA31B1PQ5VZV4 182 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 C10orf99Q6UWK7 81 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 LCN15Q6UWW0 184 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 TOMM20LQ6UXN7 152 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 NTM-AS1Q6ZSK4 140 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 MIR17HGQ75NE6 70 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 SSX7Q7RTT5 188 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 LINC00305Q7Z4B0 112 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 S100A7AQ86SG5 101 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 GPHB5Q86YW7 130 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 C14orf144Q96I85 54 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 ZNF414Q96IQ9 312 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 FAM167A-AS1Q96KT0 104 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 FAM19A4Q96LR4 140 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 SCRT1Q9BWW7 348 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 MRPL32Q9BYC8 188 aaKnown RBP2.56□□□□□ -2
PTCD3-216ENST00000487043 MAP1LC3BQ9GZQ8 125 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 DOK5Q9P104 306 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 PUS1Q9Y606 427 aaKnown RBP eCLIP2.56□□□□□ -2
PTCD3-216ENST00000487043 NF1P21359 2839 aa2.56□□□□□ -2
PTCD3-216ENST00000487043 A0A1B0GV50 99 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 A0A1B0GV90 55 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 CLPSL1A2RUU4 121 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 PPP5D1E7EU14 171 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 H3BRN7 92 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 NDUFA4O00483 81 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 HMGB3O15347 200 aaKnown RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 NDUFS6O75380 124 aaKnown RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 TRBV12-3P01733 135 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 IGHV3-11P01762 117 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 APCSP02743 223 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 FN1P02751 2386 aaKnown RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 LGALS1P09382 135 aaKnown RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 LINC00614P0C842 121 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 ADCYAP1P18509 176 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 GCHFRP30047 84 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 USF2Q15853 346 aaPredicted RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 C6orf99Q4VX62 202 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 KHDC3LQ587J8 217 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 ZFP2Q6ZN57 461 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 SH2D6Q7Z4S9 175 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 BTF3L4Q96K17 158 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 KCNS1Q96KK3 526 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 C20orf144Q9BQM9 153 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 TXNDC17Q9BRA2 123 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 SHANK2-AS3Q9BTD1 123 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 EIF5A2Q9GZV4 153 aaKnown RBP2.55□□□□□ -2
PTCD3-216ENST00000487043 SLC35B3Q9H1N7 401 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 MANBALQ9NQG1 85 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 TMEM167BQ9NRX6 74 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 TMEM242Q9NWH2 141 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 TMEM14CQ9P0S9 112 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 RABAC1Q9UI14 185 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 VAX2Q9UIW0 290 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 HIGD1AQ9Y241 93 aa2.55□□□□□ -2
PTCD3-216ENST00000487043 F8P00451 2351 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 NIPBLQ6KC79 2804 aaeCLIP2.54□□□□□ -22e-31■■■□□ 14.8
PTCD3-216ENST00000487043 AKAP9Q99996 3911 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 FAM240AA0A1B0GVK7 77 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 TMEM223A0PJW6 202 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 A8MWP6 167 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 M0R143 59 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 LGALS9O00182 355 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 OR7C2O60412 319 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 IFNA1P01562 189 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 SRP19P09132 144 aaKnown RBP2.54□□□□□ -2
PTCD3-216ENST00000487043 OR5AL1P0C617 328 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 NBEAP1P0C6P0 100 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 ZNF688P0C7X2 276 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 ARL14EPLP0DKL9 152 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 PYYP10082 97 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 HIST1H1EP10412 219 aaKnown RBP2.54□□□□□ -2
PTCD3-216ENST00000487043 BCL2P10415 239 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 CD28P10747 220 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 RPL7P18124 248 aaKnown RBP2.54□□□□□ -2
PTCD3-216ENST00000487043 NPPCP23582 126 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 CRYBB3P26998 211 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 MEF2BQ02080 365 aaPredicted RBP2.54□□□□□ -2
PTCD3-216ENST00000487043 COTL1Q14019 142 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 JOSD1Q15040 202 aaPredicted RBP2.54□□□□□ -2
PTCD3-216ENST00000487043 C1orf194Q5T5A4 169 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 UNQ9165/PRO28630Q6UXU0 137 aa2.54□□□□□ -2
PTCD3-216ENST00000487043 BPIFA4PQ86YQ2 179 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms