RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 OVOS2A0A0G2JMS6 1433 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 MED13LQ71F56 2210 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 ASXL3Q9C0F0 2248 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 DEGS1O15121 323 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 ATP11AUNQ6ZP68 121 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 SMIM15Q7Z3B0 74 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 IFI27L1Q96BM0 104 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 Q96NJ1 140 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 DSCR8Q96T75 97 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 SLC35B3Q9H1N7 401 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 ANK1P16157 1881 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 WNK2Q9Y3S1 2297 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 ACACBO00763 2458 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 DSPP15924 2871 aaKnown RBP-0.19□□□□□ -2.44
VPS50-216ENST00000484954 KIDINS220Q9ULH0 1771 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 FAT2Q9NYQ8 4349 aa-0.19□□□□□ -2.44
VPS50-216ENST00000484954 MAP1BP46821 2468 aaKnown RBP-0.2□□□□□ -2.44
VPS50-216ENST00000484954 TRANK1O15050 2925 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 LRP5O75197 1615 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 FER1L6Q2WGJ9 1857 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 ANKRD31Q8N7Z5 1873 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 ARAP1Q96P48 1450 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 TRAV12-2A0A075B6T6 113 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 TRAV2A0A0B4J234 112 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 H0YJX3 145 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 B2MP61769 119 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 NPC2P61916 151 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 ATP6V0E2Q8NHE4 81 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 DYNLRB2Q8TF09 96 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 SKA2Q8WVK7 121 aaPredicted RBP-0.2□□□□□ -2.44
VPS50-216ENST00000484954 COA4Q9NYJ1 87 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 TAS2R8Q9NYW2 309 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 LSM2Q9Y333 95 aaKnown RBP-0.2□□□□□ -2.44
VPS50-216ENST00000484954 HSPB11Q9Y547 144 aa-0.2□□□□□ -2.44
VPS50-216ENST00000484954 USP9YO00507 2555 aaPredicted RBP-0.2□□□□□ -2.44
VPS50-216ENST00000484954 SOGA1O94964 1423 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 ITPR1Q14643 2758 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CDK12Q9NYV4 1490 aaPredicted RBP-0.21□□□□□ -2.44
VPS50-216ENST00000484954 RBBP6Q7Z6E9 1792 aaKnown RBP-0.21□□□□□ -2.44
VPS50-216ENST00000484954 WDFY4Q6ZS81 3184 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 BIRC6Q9NR09 4857 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 GNG14A0A1W2PPG7 69 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 MCRIP1C9JLW8 97 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 ZNF670-ZNF695F2Z2N8 137 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 TSTD3H0UI37 97 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 SMIM24O75264 130 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CCL3L1P16619 93 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CMPK1P30085 196 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CLLU1Q5K131 121 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 NDUFA11Q86Y39 141 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 SNX29P2Q8IUI4 249 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 TCTE3Q8IZS6 198 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 SELENOSQ9BQE4 189 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 VPS25Q9BRG1 176 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 PRR15LQ9BU68 103 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 BANF2Q9H503 90 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CALML5Q9NZT1 146 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 U3KQA8 63 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 CCDC168Q8NDH2 2452 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 HERC2O95714 4834 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 LAMA2P24043 3122 aaKnown RBP-0.21□□□□□ -2.44
VPS50-216ENST00000484954 MYCBP2O75592 4640 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 APC2O95996 2303 aa-0.21□□□□□ -2.44
VPS50-216ENST00000484954 SIPA1L2Q9P2F8 1722 aaPredicted RBP-0.21□□□□□ -2.44
VPS50-216ENST00000484954 PTPRMP28827 1452 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 MXRA5Q9NR99 2828 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 MYO18BQ8IUG5 2567 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 FLNBO75369 2602 aaKnown RBP-0.22□□□□□ -2.44
VPS50-216ENST00000484954 ATRQ13535 2644 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 PKHD1P08F94 4074 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 M0R2P5 195 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 APOC1P02654 83 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 NMBP08949 121 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 TAC4Q86UU9 113 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 PPP1R1CQ8WVI7 109 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 BPESC1Q9GZL8 116 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 NOP16Q9Y3C1 178 aaKnown RBP-0.22□□□□□ -2.44
VPS50-216ENST00000484954 PBRM1Q86U86 1689 aa-0.22□□□□□ -2.44
VPS50-216ENST00000484954 FLGP20930 4061 aaPredicted RBP-0.22□□□□□ -2.44
VPS50-216ENST00000484954 TACC2O95359 2948 aa-0.22□□□□□ -2.45
VPS50-216ENST00000484954 F5P12259 2224 aa-0.22□□□□□ -2.45
VPS50-216ENST00000484954 ITPR3Q14573 2671 aa-0.22□□□□□ -2.45
VPS50-216ENST00000484954 LRP1BQ9NZR2 4599 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 HTTP42858 3142 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 ALMS1Q8TCU4 4167 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 DNAH6Q9C0G6 4158 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 DLEC1Q9Y238 1755 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 TCRBV3S1A0A5B6 114 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 RBAKDNA6NC62 111 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 F2Z2F3 143 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 PITX3O75364 302 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 COX6A2Q02221 97 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 C20orf197Q8N268 126 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 AFDNP55196 1824 aaKnown RBP-0.23□□□□□ -2.45
VPS50-216ENST00000484954 PRRC2CQ9Y520 2896 aaKnown RBP-0.23□□□□□ -2.45
VPS50-216ENST00000484954 ATG2AQ2TAZ0 1938 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 UHRF1BP1LA0JNW5 1464 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 AKAP9Q99996 3911 aa-0.23□□□□□ -2.45
VPS50-216ENST00000484954 SSC5DA1L4H1 1573 aa-0.23□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms