RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 CRYGDP07320 174 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 LINC00694P0DN24 101 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GAGE1Q13065 139 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GAGE4Q13068 117 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GAGE5Q13069 117 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GAGE13Q4V321 117 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 Q6ZRN7 208 aaPredicted RBP10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 C14orf178Q8N769 122 aaPredicted RBP10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 SMIM12Q96EX1 92 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 GTSF1LQ9H1H1 148 aa10.66□□□□□ -0.7
CCDC28B-205ENST00000483009 TRAV8-6A0A0B4J262 113 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 GNG4P50150 75 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 NKX2-5P52952 324 aaPredicted RBP10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 BLOC1S1P78537 153 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 LELP1Q5T871 98 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 C10orf126Q8N4M7 172 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 OR10AG1Q8NH19 301 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 SSBP4Q9BWG4 385 aaPredicted RBP10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 BOLA1Q9Y3E2 137 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 PKD1P98161 4303 aa10.65□□□□□ -0.7
CCDC28B-205ENST00000483009 IGHV3-38A0A0C4DH36 116 aa10.64□□□□□ -0.71
CCDC28B-205ENST00000483009 OR5AL1P0C617 328 aa10.64□□□□□ -0.71
CCDC28B-205ENST00000483009 OR10J3Q5JRS4 329 aa10.64□□□□□ -0.71
CCDC28B-205ENST00000483009 NFE4Q86UQ8 179 aa10.64□□□□□ -0.71
CCDC28B-205ENST00000483009 DAZAP1Q96EP5 407 aaKnown RBP10.64□□□□□ -0.71
CCDC28B-205ENST00000483009 KIAA1109Q2LD37 5005 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 TRBV20OR9-2A0A075B6H5 130 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 LINC01556Q5JQF7 62 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 MSRB1Q9NZV6 116 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 Q9UF83 564 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 TNFRSF18Q9Y5U5 241 aa10.63□□□□□ -0.71
CCDC28B-205ENST00000483009 C19orf71A6NCJ1 209 aa10.62□□□□□ -0.71
CCDC28B-205ENST00000483009 RPS20P60866 119 aaKnown RBP10.62□□□□□ -0.71
CCDC28B-205ENST00000483009 SPANXN1Q5VSR9 72 aa10.62□□□□□ -0.71
CCDC28B-205ENST00000483009 OR2D3Q8NGH3 330 aa10.62□□□□□ -0.71
CCDC28B-205ENST00000483009 BIN3Q9NQY0 253 aa10.62□□□□□ -0.71
CCDC28B-205ENST00000483009 MUC21A0A0G2JKD1 596 aa10.61□□□□□ -0.71
CCDC28B-205ENST00000483009 TRBV10-1A0A0K0K1A3 114 aa10.61□□□□□ -0.71
CCDC28B-205ENST00000483009 MUC21A0A140T8X8 626 aa10.61□□□□□ -0.71
CCDC28B-205ENST00000483009 C16orf90A8MZG2 172 aa10.61□□□□□ -0.71
CCDC28B-205ENST00000483009 LYPD6BQ8NI32 183 aa10.61□□□□□ -0.71
CCDC28B-205ENST00000483009 P01737 135 aa10.6□□□□□ -0.71
CCDC28B-205ENST00000483009 IGLC6P0CF74 106 aa10.6□□□□□ -0.71
CCDC28B-205ENST00000483009 SPATA12Q7Z6I5 190 aa10.6□□□□□ -0.71
CCDC28B-205ENST00000483009 A0A087WWC5 75 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 XKRY2A2RUG3 117 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 RBFOX3A6NFN3 312 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 TMEM250H0YL14 139 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 GZMBP10144 247 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 RAB4BP61018 213 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 ZNF56Q15929 161 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 FER1L6-AS1Q8NA97 138 aa10.59□□□□□ -0.71
CCDC28B-205ENST00000483009 IGHV3-30P01768 117 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 IGHV3-33P01772 117 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 IGHV3-30-3P0DP02 117 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 IGHV3-30-5P0DP03 117 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 ERVFC1-1P60608 527 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 SSTP61278 116 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 RPL36AP83881 106 aaKnown RBP10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 RPL36ALQ969Q0 106 aaKnown RBP10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 AP1S3Q96PC3 154 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 TPPP3Q9BW30 176 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 LRP1BQ9NZR2 4599 aa10.58□□□□□ -0.72
CCDC28B-205ENST00000483009 IBA57-AS1B1ANH7 110 aa10.57□□□□□ -0.72
CCDC28B-205ENST00000483009 OR10G8Q8NGN5 311 aa10.57□□□□□ -0.72
CCDC28B-205ENST00000483009 TRBV7-3A0A075B6L6 115 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 EREGO14944 169 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 SMIM17P0DL12 118 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 KRTAP10-2P60368 255 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 UBE2D3P61077 147 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 UBE2D2P62837 147 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 CACNG7P62955 275 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 TOR2AQ5JU69 321 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 NUDT10Q8NFP7 164 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 OCC1Q8TAD7 63 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 NUDT11Q96G61 164 aa10.56□□□□□ -0.72
CCDC28B-205ENST00000483009 F2Z2F3 143 aa10.55□□□□□ -0.72
CCDC28B-205ENST00000483009 F5H697 171 aa10.55□□□□□ -0.72
CCDC28B-205ENST00000483009 NEXN-AS1Q8NBZ9 246 aa10.55□□□□□ -0.72
CCDC28B-205ENST00000483009 KIF25-AS1Q9Y6Z4 181 aa10.55□□□□□ -0.72
CCDC28B-205ENST00000483009 RYR1P21817 5038 aa10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 A0A087WTM6 91 aa10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 K7EN84 100 aa10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 LAGE3Q14657 143 aa10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 Q8N3U1 123 aa10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 RPP21Q9H633 154 aaKnown RBP10.54□□□□□ -0.72
CCDC28B-205ENST00000483009 NDUFS6O75380 124 aaKnown RBP10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 LYZL1Q6UWQ5 148 aa10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 FAM210AQ96ND0 272 aa10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 EIF5A2Q9GZV4 153 aaKnown RBP10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 RNASE7Q9H1E1 156 aaKnown RBP10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 Q9HAA7 133 aa10.53□□□□□ -0.72
CCDC28B-205ENST00000483009 MGPP08493 103 aa10.52□□□□□ -0.73
CCDC28B-205ENST00000483009 CTRLP40313 264 aa10.52□□□□□ -0.73
CCDC28B-205ENST00000483009 CEBPGP53567 150 aa10.52□□□□□ -0.73
CCDC28B-205ENST00000483009 NIT1Q86X76 327 aa10.52□□□□□ -0.73
CCDC28B-205ENST00000483009 PSCAO43653 123 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 TRGC1P0CF51 173 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 WDR73Q6P4I2 378 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 DAZ4Q86SG3 579 aaKnown RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms