RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, human

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS50-215	ENST00000480943	PRNT	Q86SH4	94 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	CYB561D1	Q8N8Q1	229 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	TMEM75	Q8N9X5	138 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	OR4C5	Q8NGB2	326 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	SUN5	Q8TC36	379 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	PCNP	Q8WW12	178 aa	Known RBP	4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	RASL10A	Q92737	203 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	KCNS1	Q96KK3	526 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	PSG8	Q9UQ74	426 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	HHLA3	Q9XRX5	114 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	ABCA13	Q86UQ4	5058 aa		4.17	□□□□□ -1.74
VPS50-215	ENST00000480943	DNAH5	Q8TE73	4624 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	TRAV34	A0A0B4J273	112 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	LOC100131303	A0A0U1RQF7	123 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	CTXND1	A0A1B0GTU2	59 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943		A0A1W2PPQ1	181 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943		C9JCJ5	164 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	SMLR1	H3BR10	107 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943		K7EQD1	137 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943		M0R2P5	195 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	LINC00315	P59091	139 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	SMUG1	Q53HV7	270 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	AKR1C8P	Q5T2L2	129 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	LYPD5	Q6UWN5	251 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	NEGR1	Q7Z3B1	354 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	EPDR1	Q9UM22	224 aa		4.16	□□□□□ -1.74
VPS50-215	ENST00000480943	IGHV3-73	A0A0B4J1V6	119 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943		A0A1W2PRE2	83 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	MAP1LC3B2	A6NCE7	125 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	GAGE10	A6NGK3	116 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	TAAR5	O14804	337 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	IFNA7	P01567	189 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	ORM1	P02763	201 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	PFN1	P07737	140 aa	Known RBP	4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	SPATA12	Q7Z6I5	190 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943		Q86TA4	180 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	WFDC10B	Q8IUB3	73 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	NHLRC2	Q8NBF2	726 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	LINC00479	Q96M42	142 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	MAP1LC3B	Q9GZQ8	125 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	CYTL1	Q9NRR1	136 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	ARL2-SNX15	V9GYD0	113 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	LRP1B	Q9NZR2	4599 aa		4.15	□□□□□ -1.75
VPS50-215	ENST00000480943	APOB	P04114	4563 aa	Known RBP	4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	PGPEP1L	A6NFU8	196 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	FBLL1	A6NHQ2	334 aa	Known RBP	4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	FAM74A7	A6NL05	159 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	PEX7	O00628	323 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	RS1	O15537	224 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	RNASE3	P12724	160 aa	Known RBP	4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	GATA1	P15976	413 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	PPT1	P50897	306 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	UBE2G1	P62253	170 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	ZNF876P	Q49A33	203 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	ZNF506	Q5JVG8	444 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	SAPCD1	Q5SSQ6	148 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	DPPA3	Q6W0C5	159 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943		Q6ZRN7	208 aa	Predicted RBP	4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	C9orf85	Q96MD7	179 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	TXNDC17	Q9BRA2	123 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943	LY96	Q9Y6Y9	160 aa		4.14	□□□□□ -1.75
VPS50-215	ENST00000480943		A0A1B0GV50	99 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943		H3BVH4	76 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943		M0R036	132 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	CFC1B	P0CG36	223 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	CFC1	P0CG37	223 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	S100A4	P26447	101 aa	Known RBP	4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	ASIP	P42127	132 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	AKR1C3	P42330	323 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	ZNF345	Q14585	488 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	RHOH	Q15669	191 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	CFAP126	Q5VTH2	177 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	NFE4	Q86UQ8	179 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	KCNRG	Q8N5I3	272 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	HIST1H2BA	Q96A08	127 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	ZC2HC1A	Q96GY0	325 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	HSPG2	P98160	4391 aa		4.13	□□□□□ -1.75
VPS50-215	ENST00000480943	TRAV9-2	A0A087WT02	112 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	IGKV3D-20	A0A0C4DH25	116 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	KANTR	A0A1W2PQU2	76 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	GRIFIN	A4D1Z8	144 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	FABP5P3	A8MUU1	101 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943		B4DEV8	164 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	BCL2L11	O43521	198 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	SH2D1A	O60880	128 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	DNAH10OS	P0CZ25	163 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	EVI2A	P22794	236 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	FHIT	P49789	147 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	LGALSL	Q3ZCW2	172 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	CST9LP1	Q5W188	147 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	SH2D6	Q7Z4S9	175 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	SLC25A29	Q8N8R3	303 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	OR11H4	Q8NGC9	324 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	STOML3	Q8TAV4	291 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	FAM213B	Q8TBF2	198 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	FMC1	Q96HJ9	113 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	PRADC1	Q9BSG0	188 aa		4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	ZNF471	Q9BX82	626 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	NKX6-2	Q9C056	277 aa	Predicted RBP	4.12	□□□□□ -1.75
VPS50-215	ENST00000480943	PARL	Q9H300	379 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms