RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 IGHV3-73A0A0B4J1V6 119 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 LINC00862A6NCI5 91 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 FAM231BA6NCW3 169 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 FOXA3P55318 350 aaPredicted RBP13.72□□□□□ -0.21
LIME1-205ENST00000480139 RHOHQ15669 191 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 SLC25A29Q8N8R3 303 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 GTSF1Q8WW33 167 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 AP1S3Q96PC3 154 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 V9GYV3 84 aa13.72□□□□□ -0.21
LIME1-205ENST00000480139 MUC21A0A0G2JKD1 596 aa13.71□□□□□ -0.21
LIME1-205ENST00000480139 MUC21A0A140T8X8 626 aa13.71□□□□□ -0.21
LIME1-205ENST00000480139 PNRC1Q12796 327 aaPredicted RBP13.71□□□□□ -0.21
LIME1-205ENST00000480139 MRPL23Q16540 153 aaKnown RBP13.71□□□□□ -0.21
LIME1-205ENST00000480139 TSKUQ8WUA8 353 aa13.71□□□□□ -0.21
LIME1-205ENST00000480139 DNAH1Q9P2D7 4330 aa13.71□□□□□ -0.22
LIME1-205ENST00000480139 SACSQ9NZJ4 4579 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 A0A087WWL8 130 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 FAM3BP58499 235 aaPredicted RBP13.7□□□□□ -0.22
LIME1-205ENST00000480139 FAM74A4Q5TZK3 123 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 COMMD7Q86VX2 200 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 OR10G8Q8NGN5 311 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 PRADC1Q9BSG0 188 aa13.7□□□□□ -0.22
LIME1-205ENST00000480139 K7EQD1 137 aa13.69□□□□□ -0.22
LIME1-205ENST00000480139 GYPEP15421 78 aa13.69□□□□□ -0.22
LIME1-205ENST00000480139 TMEM218A2RU14 115 aa13.68□□□□□ -0.22
LIME1-205ENST00000480139 CCL18P55774 89 aa13.68□□□□□ -0.22
LIME1-205ENST00000480139 Q6ZSN1 163 aa13.68□□□□□ -0.22
LIME1-205ENST00000480139 SH2D6Q7Z4S9 175 aa13.68□□□□□ -0.22
LIME1-205ENST00000480139 KIF25-AS1Q9Y6Z4 181 aa13.68□□□□□ -0.22
LIME1-205ENST00000480139 TRGC1P0CF51 173 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 NTF3P20783 257 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 SRIP30626 198 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 RAB4BP61018 213 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 SSTP61278 116 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 UBE2DNLQ8IWF7 75 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 C14orf178Q8N769 122 aaPredicted RBP13.67□□□□□ -0.22
LIME1-205ENST00000480139 MSRB1Q9NZV6 116 aa13.67□□□□□ -0.22
LIME1-205ENST00000480139 SMIM17P0DL12 118 aa13.66□□□□□ -0.22
LIME1-205ENST00000480139 NEGR1Q7Z3B1 354 aa13.66□□□□□ -0.22
LIME1-205ENST00000480139 VPS13DQ5THJ4 4388 aa13.66□□□□□ -0.22
LIME1-205ENST00000480139 LOC100131303A0A0U1RQF7 123 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 HIGD1CA8MV81 97 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 LINC00315P59091 139 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 TWIST1Q15672 202 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 ESRGQ1W209 222 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 LINC00588Q9Y4M8 146 aa13.65□□□□□ -0.22
LIME1-205ENST00000480139 RYR2Q92736 4967 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 TRBV10-1A0A0K0K1A3 114 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 PPP1R2P9O14990 202 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 ADCYAP1P18509 176 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 ZNF56Q15929 161 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 BORCS7Q96B45 105 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 PGLYRP4Q96LB8 373 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 SEC11CQ9BY50 192 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 NAT8BQ9UHF3 227 aa13.64□□□□□ -0.23
LIME1-205ENST00000480139 SMIM27A0A1W2PRY6 76 aa13.63□□□□□ -0.23
LIME1-205ENST00000480139 F8W036 122 aa13.63□□□□□ -0.23
LIME1-205ENST00000480139 LINC00694P0DN24 101 aa13.63□□□□□ -0.23
LIME1-205ENST00000480139 UPK3BQ9BT76 320 aa13.63□□□□□ -0.23
LIME1-205ENST00000480139 DPH3P1Q9H4G8 78 aa13.63□□□□□ -0.23
LIME1-205ENST00000480139 MRPS16Q9Y3D3 137 aaKnown RBP13.63□□□□□ -0.23
LIME1-205ENST00000480139 A0A1B0GUT8 65 aa13.62□□□□□ -0.23
LIME1-205ENST00000480139 EVI2AP22794 236 aa13.62□□□□□ -0.23
LIME1-205ENST00000480139 LYPD5Q6UWN5 251 aa13.62□□□□□ -0.23
LIME1-205ENST00000480139 TIRAPP58753 221 aa13.61□□□□□ -0.23
LIME1-205ENST00000480139 NUP35Q8NFH5 326 aa13.61□□□□□ -0.23
LIME1-205ENST00000480139 ANAPC16Q96DE5 110 aa13.61□□□□□ -0.23
LIME1-205ENST00000480139 RYR3Q15413 4870 aa13.61□□□□□ -0.23
LIME1-205ENST00000480139 MT-ND4LP03901 98 aa13.6□□□□□ -0.23
LIME1-205ENST00000480139 C10orf91Q5T1B1 145 aa13.6□□□□□ -0.23
LIME1-205ENST00000480139 SMIM15Q7Z3B0 74 aa13.6□□□□□ -0.23
LIME1-205ENST00000480139 ZNRF2Q8NHG8 242 aa13.6□□□□□ -0.23
LIME1-205ENST00000480139 F5H697 171 aa13.59□□□□□ -0.23
LIME1-205ENST00000480139 Q9UF83 564 aa13.59□□□□□ -0.23
LIME1-205ENST00000480139 HYDINQ4G0P3 5121 aa13.59□□□□□ -0.23
LIME1-205ENST00000480139 GAGE12JA6NER3 117 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 H7C1H1 209 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 MGPP08493 103 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 RPL36AP83881 106 aaKnown RBP13.58□□□□□ -0.24
LIME1-205ENST00000480139 GAGE1Q13065 139 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 GAGE4Q13068 117 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 GAGE5Q13069 117 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 RIGQ13278 110 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 GAGE13Q4V321 117 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 ATP6V0E2Q8NHE4 81 aa13.58□□□□□ -0.24
LIME1-205ENST00000480139 RPL36ALQ969Q0 106 aaKnown RBP13.58□□□□□ -0.24
LIME1-205ENST00000480139 TRBV7-3A0A075B6L6 115 aa13.57□□□□□ -0.24
LIME1-205ENST00000480139 SUMO4Q6EEV6 95 aa13.57□□□□□ -0.24
LIME1-205ENST00000480139 CARHSP1Q9Y2V2 147 aaKnown RBP13.57□□□□□ -0.24
LIME1-205ENST00000480139 A0A1B0GW15 77 aa13.56□□□□□ -0.24
LIME1-205ENST00000480139 M0QY20 66 aa13.56□□□□□ -0.24
LIME1-205ENST00000480139 NEXN-AS1Q8NBZ9 246 aa13.56□□□□□ -0.24
LIME1-205ENST00000480139 TMEM191AQ9H0A3 160 aa13.56□□□□□ -0.24
LIME1-205ENST00000480139 GTSF1LQ9H1H1 148 aa13.56□□□□□ -0.24
LIME1-205ENST00000480139 UBE2D3P61077 147 aa13.55□□□□□ -0.24
LIME1-205ENST00000480139 UBE2D2P62837 147 aa13.55□□□□□ -0.24
LIME1-205ENST00000480139 FRZBQ92765 325 aa13.55□□□□□ -0.24
LIME1-205ENST00000480139 KMT2AQ03164 3969 aa13.54□□□□□ -0.24
LIME1-205ENST00000480139 DNAJC30Q96LL9 226 aa13.54□□□□□ -0.24
LIME1-205ENST00000480139 Q9H8V8 135 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms