RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 A0A087WWL8 130 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 A0A0D9SG52 128 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 A0A1B0GV50 99 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 SCO2A0A1W2PP80 73 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 BCL2L11O43521 198 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 SYT8Q8NBV8 401 aa12.36□□□□□ -0.43
COL7A1-209ENST00000474432 ZNF471Q9BX82 626 aaPredicted RBP12.36□□□□□ -0.43
COL7A1-209ENST00000474432 RHODO00212 210 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 GCSHP23434 173 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 WFDC2Q14508 124 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 LAGE3Q14657 143 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 PHLDA3Q9Y5J5 127 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 DNAH8Q96JB1 4490 aa12.35□□□□□ -0.43
COL7A1-209ENST00000474432 M0R381 172 aa12.34□□□□□ -0.43
COL7A1-209ENST00000474432 PSCAO43653 123 aa12.34□□□□□ -0.43
COL7A1-209ENST00000474432 TPT1P13693 172 aaKnown RBP12.34□□□□□ -0.43
COL7A1-209ENST00000474432 RPL19P84098 196 aaKnown RBP12.34□□□□□ -0.43
COL7A1-209ENST00000474432 FAM74A4Q5TZK3 123 aa12.34□□□□□ -0.43
COL7A1-209ENST00000474432 DAZ4Q86SG3 579 aaKnown RBP12.34□□□□□ -0.43
COL7A1-209ENST00000474432 DAZ3Q9NR90 486 aaKnown RBP12.34□□□□□ -0.43
COL7A1-209ENST00000474432 Q8N814 137 aa12.33□□□□□ -0.44
COL7A1-209ENST00000474432 KANTRA0A1W2PQU2 76 aa12.32□□□□□ -0.44
COL7A1-209ENST00000474432 S100A9P06702 114 aaKnown RBP12.32□□□□□ -0.44
COL7A1-209ENST00000474432 H2AFB1P0C5Y9 115 aa12.32□□□□□ -0.44
COL7A1-209ENST00000474432 CCL20P78556 96 aa12.32□□□□□ -0.44
COL7A1-209ENST00000474432 TMUB2Q71RG4 321 aa12.32□□□□□ -0.44
COL7A1-209ENST00000474432 ZFP82Q8N141 532 aa12.32□□□□□ -0.44
COL7A1-209ENST00000474432 A0A087WWC5 75 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 EPM2AB3EWF7 344 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 CXCL1P09341 107 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 BAGE2Q86Y30 109 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 OR10AG1Q8NH19 301 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 NTN5Q8WTR8 489 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-209ENST00000474432 DNAJC30Q96LL9 226 aa12.31□□□□□ -0.44
COL7A1-209ENST00000474432 SSBP4Q9BWG4 385 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-209ENST00000474432 IGLV5-52A0A0A0MRZ9 124 aa12.3□□□□□ -0.44
COL7A1-209ENST00000474432 NIT1Q86X76 327 aa12.3□□□□□ -0.44
COL7A1-209ENST00000474432 VPS13BQ7Z7G8 4022 aa12.29□□□□□ -0.44
COL7A1-209ENST00000474432 SNAI2O43623 268 aa12.29□□□□□ -0.44
COL7A1-209ENST00000474432 UBE2D3P61077 147 aa12.29□□□□□ -0.44
COL7A1-209ENST00000474432 UBE2D2P62837 147 aa12.29□□□□□ -0.44
COL7A1-209ENST00000474432 HAMPP81172 84 aa12.29□□□□□ -0.44
COL7A1-209ENST00000474432 TRAV1-1A0A0B4J248 108 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 TRBV10-1A0A0K0K1A3 114 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 PFDN1O60925 122 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 PRR27Q6MZM9 219 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 OR10G8Q8NGN5 311 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 C11orf52Q96A22 123 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 DERL1Q9BUN8 251 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 TM2D2Q9BX73 214 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 FAM30AQ9NZY2 134 aa12.28□□□□□ -0.44
COL7A1-209ENST00000474432 TRAV8-3A0A0A6YYJ7 113 aa12.27□□□□□ -0.45
COL7A1-209ENST00000474432 EIF5AP63241 154 aaKnown RBP12.27□□□□□ -0.45
COL7A1-209ENST00000474432 TRBV7-3A0A075B6L6 115 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 MUC21A0A0G2JKD1 596 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 MUC21A0A140T8X8 626 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 IGLV2-8P01709 118 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 SMR3BP02814 79 aaPredicted RBP12.26□□□□□ -0.45
COL7A1-209ENST00000474432 OR5AL1P0C617 328 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 RPL35P42766 123 aaKnown RBP12.26□□□□□ -0.45
COL7A1-209ENST00000474432 Q5VSD8 79 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 TMEM70Q9BUB7 260 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 KIF25-AS1Q9Y6Z4 181 aa12.26□□□□□ -0.45
COL7A1-209ENST00000474432 LECT2O14960 151 aa12.25□□□□□ -0.45
COL7A1-209ENST00000474432 RAB4BP61018 213 aa12.25□□□□□ -0.45
COL7A1-209ENST00000474432 RPL36AP83881 106 aaKnown RBP12.25□□□□□ -0.45
COL7A1-209ENST00000474432 NEXN-AS1Q8NBZ9 246 aa12.25□□□□□ -0.45
COL7A1-209ENST00000474432 RPL36ALQ969Q0 106 aaKnown RBP12.25□□□□□ -0.45
COL7A1-209ENST00000474432 GNG13Q9P2W3 67 aa12.25□□□□□ -0.45
COL7A1-209ENST00000474432 MANBALQ9NQG1 85 aa12.24□□□□□ -0.45
COL7A1-209ENST00000474432 KLK12Q9UKR0 248 aa12.24□□□□□ -0.45
COL7A1-209ENST00000474432 SRRM2Q9UQ35 2752 aaKnown RBP12.24□□□□□ -0.45
COL7A1-209ENST00000474432 TOR2AQ5JU69 321 aa12.23□□□□□ -0.45
COL7A1-209ENST00000474432 BAALCQ8WXS3 180 aa12.23□□□□□ -0.45
COL7A1-209ENST00000474432 INAFM2P0DMQ5 153 aa12.22□□□□□ -0.45
COL7A1-209ENST00000474432 SULT1A2P50226 295 aa12.22□□□□□ -0.45
COL7A1-209ENST00000474432 TRBV6-8A0A0A6YYG3 113 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 C19orf71A6NCJ1 209 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 C1QBP02746 253 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 IGLC6P0CF74 106 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 RAB5CP51148 216 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 ZNF56Q15929 161 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 CENPWQ5EE01 88 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 ATRAIDQ6UW56 229 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 Q6ZSA8 131 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 TCTE3Q8IZS6 198 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 FRZBQ92765 325 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 CHCHD7Q9BUK0 85 aa12.21□□□□□ -0.45
COL7A1-209ENST00000474432 FLG2Q5D862 2391 aaPredicted RBP12.21□□□□□ -0.46
COL7A1-209ENST00000474432 HERC1Q15751 4861 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 RAB19A4D1S5 217 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 GZMBP10144 247 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 SSTP61278 116 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 SPANXN1Q5VSR9 72 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 NTM-AS1Q6ZSK4 140 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 URGCP-MRPS24S4R325 110 aa12.2□□□□□ -0.46
COL7A1-209ENST00000474432 TRBV20OR9-2A0A075B6H5 130 aa12.19□□□□□ -0.46
COL7A1-209ENST00000474432 RBFOX3A6NFN3 312 aa12.19□□□□□ -0.46
COL7A1-209ENST00000474432 UBE2WQ96B02 151 aa12.19□□□□□ -0.46
COL7A1-209ENST00000474432 COX11Q9Y6N1 276 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms