RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 SPANXN1Q5VSR9 72 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 LINC01551Q86U37 167 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 TPPP3Q9BW30 176 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 FAM231DQ6ZW35 169 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 FER1L6-AS1Q8NA97 138 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 OR10AG1Q8NH19 301 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 SFRP2Q96HF1 295 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 JPT2Q9H910 190 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 NAT8Q9UHE5 227 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 ICOSQ9Y6W8 199 aa12.29□□□□□ -0.44
COL7A1-205ENST00000465238 MUC21A0A0G2JKD1 596 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 MUC21A0A140T8X8 626 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 A0A1W2PPQ1 181 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 IGLC6P0CF74 106 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 GATA1P15976 413 aaPredicted RBP12.28□□□□□ -0.44
COL7A1-205ENST00000465238 SSTP61278 116 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 ZFP2Q6ZN57 461 aa12.28□□□□□ -0.44
COL7A1-205ENST00000465238 F2Z2F3 143 aa12.27□□□□□ -0.45
COL7A1-205ENST00000465238 RHODO00212 210 aa12.27□□□□□ -0.45
COL7A1-205ENST00000465238 CCL18P55774 89 aa12.27□□□□□ -0.45
COL7A1-205ENST00000465238 MRPL23Q16540 153 aaKnown RBP12.27□□□□□ -0.45
COL7A1-205ENST00000465238 RYR1P21817 5038 aa12.27□□□□□ -0.45
COL7A1-205ENST00000465238 A0A096LPF7 62 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 NXPH4O95158 308 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 CACNG7P62955 275 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 ADIRFQ15847 76 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 FAM74A4Q5TZK3 123 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 C15orf54Q8N8G6 183 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 PRADC1Q9BSG0 188 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 SAMD10Q9BYL1 202 aa12.26□□□□□ -0.45
COL7A1-205ENST00000465238 A0A087WWL8 130 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 NBDYA0A0U1RRE5 68 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 TRBV6-4A0A1B0GX49 114 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 A8MWL6 223 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 GYPEP15421 78 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 RPL23P62829 140 aaKnown RBP12.25□□□□□ -0.45
COL7A1-205ENST00000465238 LYZL1Q6UWQ5 148 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 SLC25A29Q8N8R3 303 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 ZNRF2Q8NHG8 242 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 OSTCQ9NRP0 149 aa12.25□□□□□ -0.45
COL7A1-205ENST00000465238 CRYGDP07320 174 aa12.24□□□□□ -0.45
COL7A1-205ENST00000465238 SRIP30626 198 aa12.24□□□□□ -0.45
COL7A1-205ENST00000465238 RHOHQ15669 191 aa12.24□□□□□ -0.45
COL7A1-205ENST00000465238 ISOC2Q96AB3 205 aa12.24□□□□□ -0.45
COL7A1-205ENST00000465238 K7EQD1 137 aa12.23□□□□□ -0.45
COL7A1-205ENST00000465238 CT83Q5H943 113 aa12.23□□□□□ -0.45
COL7A1-205ENST00000465238 UFSP1Q6NVU6 142 aa12.23□□□□□ -0.45
COL7A1-205ENST00000465238 SMIM17P0DL12 118 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 ESRGQ1W209 222 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 WDR73Q6P4I2 378 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 Q6ZSN1 163 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 NEGR1Q7Z3B1 354 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 C6orf223Q8N319 242 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 AP1S3Q96PC3 154 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 LINC00588Q9Y4M8 146 aa12.22□□□□□ -0.45
COL7A1-205ENST00000465238 LOC100131303A0A0U1RQF7 123 aa12.21□□□□□ -0.45
COL7A1-205ENST00000465238 CTRLP40313 264 aa12.21□□□□□ -0.45
COL7A1-205ENST00000465238 UQCC3Q6UW78 93 aa12.21□□□□□ -0.45
COL7A1-205ENST00000465238 SH2D6Q7Z4S9 175 aa12.21□□□□□ -0.45
COL7A1-205ENST00000465238 C14orf178Q8N769 122 aaPredicted RBP12.21□□□□□ -0.45
COL7A1-205ENST00000465238 OR10G8Q8NGN5 311 aa12.21□□□□□ -0.45
COL7A1-205ENST00000465238 NTF3P20783 257 aa12.2□□□□□ -0.46
COL7A1-205ENST00000465238 TNP2Q05952 138 aa12.2□□□□□ -0.46
COL7A1-205ENST00000465238 TSKUQ8WUA8 353 aa12.2□□□□□ -0.46
COL7A1-205ENST00000465238 GTSF1Q8WW33 167 aa12.2□□□□□ -0.46
COL7A1-205ENST00000465238 MSRB1Q9NZV6 116 aa12.2□□□□□ -0.46
COL7A1-205ENST00000465238 F5H697 171 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 TRGC1P0CF51 173 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 RAB4BP61018 213 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 TWIST1Q15672 202 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 ZNF56Q15929 161 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 BORCS7Q96B45 105 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 PGLYRP4Q96LB8 373 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 GFRA4Q9GZZ7 299 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 V9GYV3 84 aa12.19□□□□□ -0.46
COL7A1-205ENST00000465238 FAM231BA6NCW3 169 aa12.18□□□□□ -0.46
COL7A1-205ENST00000465238 FOXA3P55318 350 aaPredicted RBP12.18□□□□□ -0.46
COL7A1-205ENST00000465238 LYPD5Q6UWN5 251 aa12.18□□□□□ -0.46
COL7A1-205ENST00000465238 COMMD7Q86VX2 200 aa12.18□□□□□ -0.46
COL7A1-205ENST00000465238 CNFNQ9BYD5 112 aa12.18□□□□□ -0.46
COL7A1-205ENST00000465238 MRPS16Q9Y3D3 137 aaKnown RBP12.17□□□□□ -0.46
COL7A1-205ENST00000465238 KIF25-AS1Q9Y6Z4 181 aa12.17□□□□□ -0.46
COL7A1-205ENST00000465238 GAGE12JA6NER3 117 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 HIGD1CA8MV81 97 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 MGPP08493 103 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 PNRC1Q12796 327 aaPredicted RBP12.16□□□□□ -0.46
COL7A1-205ENST00000465238 GAGE1Q13065 139 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 GAGE4Q13068 117 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 GAGE5Q13069 117 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 GAGE13Q4V321 117 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 SMIM15Q7Z3B0 74 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 Q9H8V8 135 aa12.16□□□□□ -0.46
COL7A1-205ENST00000465238 ABCA13Q86UQ4 5058 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 TRBV10-1A0A0K0K1A3 114 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 LINC00862A6NCI5 91 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 C16orf90A8MZG2 172 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 EVI2AP22794 236 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 TTC32Q5I0X7 151 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 ATP6V0E2Q8NHE4 81 aa12.15□□□□□ -0.46
COL7A1-205ENST00000465238 DPH3P1Q9H4G8 78 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms