RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CRIP1P50238 77 aa10.59□□□□□ -0.71
COL7A1-204ENST00000462475 RPL7L1Q6DKI1 246 aaKnown RBP10.59□□□□□ -0.71
COL7A1-204ENST00000462475 ZC2HC1AQ96GY0 325 aa10.59□□□□□ -0.71
COL7A1-204ENST00000462475 GRIFINA4D1Z8 144 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 KRBOX1C9JBD0 128 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 M0R036 132 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 RHODO00212 210 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 ARMS2P0C7Q2 107 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 FGF8P55075 233 aaPredicted RBP10.58□□□□□ -0.72
COL7A1-204ENST00000462475 FAM74A4Q5TZK3 123 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 SCXQ7RTU7 201 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 NIT1Q86X76 327 aa10.58□□□□□ -0.72
COL7A1-204ENST00000462475 FAT3Q8TDW7 4589 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 FXYD6-FXYD2A0A087WZ82 144 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 CTXND1A0A1B0GTU2 59 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 RNF222A6NCQ9 220 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 SH2D1AO60880 128 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 DNLZQ5SXM8 178 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 SYT8Q8NBV8 401 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 COX11Q9Y6N1 276 aa10.57□□□□□ -0.72
COL7A1-204ENST00000462475 IGKV2D-24A0A075B6R9 120 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 A0A087WWL8 130 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 FAM74A7A6NL05 159 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 ARPC5O15511 151 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 RMI2Q96E14 147 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 KLK12Q9UKR0 248 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 URGCP-MRPS24S4R325 110 aa10.56□□□□□ -0.72
COL7A1-204ENST00000462475 HMCN2Q8NDA2 5059 aa10.55□□□□□ -0.72
COL7A1-204ENST00000462475 RBFOX3A6NFN3 312 aa10.55□□□□□ -0.72
COL7A1-204ENST00000462475 KRTAP29-1A8MX34 341 aaPredicted RBP10.55□□□□□ -0.72
COL7A1-204ENST00000462475 COX8CQ7Z4L0 72 aa10.55□□□□□ -0.72
COL7A1-204ENST00000462475 HIST1H2BAQ96A08 127 aa10.55□□□□□ -0.72
COL7A1-204ENST00000462475 SFRP2Q96HF1 295 aa10.55□□□□□ -0.72
COL7A1-204ENST00000462475 TMSB15BA0A087X1C1 80 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 BORCS7-ASMTA0A0B4J1R7 106 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 A0A0D9SG52 128 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 M0R381 172 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 IFITM2Q01629 132 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 FAM162BQ5T6X4 162 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 Q8N976 141 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 INO80EQ8NBZ0 244 aaPredicted RBP10.54□□□□□ -0.72
COL7A1-204ENST00000462475 DEFB104AQ8WTQ1 72 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 UBE2WQ96B02 151 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 PHLDA3Q9Y5J5 127 aa10.54□□□□□ -0.72
COL7A1-204ENST00000462475 SEC11BP0C7V7 166 aa10.53□□□□□ -0.72
COL7A1-204ENST00000462475 TPT1P13693 172 aaKnown RBP10.53□□□□□ -0.72
COL7A1-204ENST00000462475 ZNF345Q14585 488 aa10.53□□□□□ -0.72
COL7A1-204ENST00000462475 TMUB2Q71RG4 321 aa10.53□□□□□ -0.72
COL7A1-204ENST00000462475 NKX6-2Q9C056 277 aaPredicted RBP10.53□□□□□ -0.72
COL7A1-204ENST00000462475 ZFP30Q9Y2G7 519 aa10.53□□□□□ -0.72
COL7A1-204ENST00000462475 A0A087WX48 190 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 KRTAP10-4P60372 401 aaPredicted RBP10.52□□□□□ -0.73
COL7A1-204ENST00000462475 LINC01559Q495D7 138 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 AKR1C8PQ5T2L2 129 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 KCNRGQ8N5I3 272 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 FMC1Q96HJ9 113 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 CHAC1Q9BUX1 264 aa10.52□□□□□ -0.73
COL7A1-204ENST00000462475 TRBV10-1A0A0K0K1A3 114 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 MAP1LC3B2A6NCE7 125 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 UBE2D3P61077 147 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 UBE2G1P62253 170 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 UBE2D2P62837 147 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 ZNF674Q2M3X9 581 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 ATRAIDQ6UW56 229 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 ZFP82Q8N141 532 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 CHCHD7Q9BUK0 85 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 MAP1LC3BQ9GZQ8 125 aa10.51□□□□□ -0.73
COL7A1-204ENST00000462475 LTAP01374 205 aa10.5□□□□□ -0.73
COL7A1-204ENST00000462475 RPL36AP83881 106 aaKnown RBP10.5□□□□□ -0.73
COL7A1-204ENST00000462475 CIRBP-AS1Q8TBR5 109 aa10.5□□□□□ -0.73
COL7A1-204ENST00000462475 RPL36ALQ969Q0 106 aaKnown RBP10.5□□□□□ -0.73
COL7A1-204ENST00000462475 PKHD1L1Q86WI1 4243 aa10.5□□□□□ -0.73
COL7A1-204ENST00000462475 TRBV7-3A0A075B6L6 115 aa10.49□□□□□ -0.73
COL7A1-204ENST00000462475 TRBV6-1A0A0K0K1D8 114 aa10.49□□□□□ -0.73
COL7A1-204ENST00000462475 KANTRA0A1W2PQU2 76 aa10.49□□□□□ -0.73
COL7A1-204ENST00000462475 ELOBQ15370 118 aa10.49□□□□□ -0.73
COL7A1-204ENST00000462475 KCNIP4Q6PIL6 250 aa10.49□□□□□ -0.73
COL7A1-204ENST00000462475 BCL2L11O43521 198 aa10.48□□□□□ -0.73
COL7A1-204ENST00000462475 OR10G8Q8NGN5 311 aa10.48□□□□□ -0.73
COL7A1-204ENST00000462475 TRBV6-8A0A0A6YYG3 113 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 AKR1C3P42330 323 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 FHITP49789 147 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 RPL19P84098 196 aaKnown RBP10.47□□□□□ -0.73
COL7A1-204ENST00000462475 CST9LP1Q5W188 147 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 TEX261Q6UWH6 196 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 ENHOQ6UWT2 76 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 SLC51BQ86UW2 128 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 NEXN-AS1Q8NBZ9 246 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 TCEAL7Q9BRU2 100 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 C1orf43Q9BWL3 253 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 CYTL1Q9NRR1 136 aa10.47□□□□□ -0.73
COL7A1-204ENST00000462475 TMEM262E9PQX1 116 aa10.46□□□□□ -0.73
COL7A1-204ENST00000462475 Q0VG73 95 aa10.46□□□□□ -0.73
COL7A1-204ENST00000462475 MPV17L2Q567V2 206 aa10.46□□□□□ -0.73
COL7A1-204ENST00000462475 C15orf54Q8N8G6 183 aa10.46□□□□□ -0.73
COL7A1-204ENST00000462475 OR10AG1Q8NH19 301 aa10.46□□□□□ -0.73
COL7A1-204ENST00000462475 CRPP02741 224 aa10.45□□□□□ -0.74
COL7A1-204ENST00000462475 RAB4BP61018 213 aa10.45□□□□□ -0.74
COL7A1-204ENST00000462475 ZNF56Q15929 161 aa10.45□□□□□ -0.74
COL7A1-204ENST00000462475 PRR27Q6MZM9 219 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms