RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 GATA1P15976 413 aaPredicted RBP4.87□□□□□ -1.63
USP54-208ENST00000461520 KRTAP10-12P60413 245 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 GNG5P63218 68 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 SERF2P84101 59 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 SERTAD4-AS1Q5TG53 156 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 C5orf17Q8NAS9 161 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 NHLRC2Q8NBF2 726 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 HSD17B11Q8NBQ5 300 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 AQP10Q96PS8 301 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 BATF3Q9NR55 127 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 MYCBP2O75592 4640 aa4.87□□□□□ -1.63
USP54-208ENST00000461520 LOC100131303A0A0U1RQF7 123 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 TRBV6-4A0A1B0GX49 114 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 RS1O15537 224 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 CXorf1O96002 111 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 GCGP01275 180 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 INAFM2P0DMQ5 153 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 PPT1P50897 306 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 ZNF80P51504 273 aaPredicted RBP4.86□□□□□ -1.63
USP54-208ENST00000461520 XGP55808 180 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 LINC01547P58512 204 aaPredicted RBP4.86□□□□□ -1.63
USP54-208ENST00000461520 FLI1Q01543 452 aaPredicted RBP4.86□□□□□ -1.63
USP54-208ENST00000461520 ZNF876PQ49A33 203 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 ZFP69Q49AA0 526 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 LINC01556Q5JQF7 62 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 CFAP126Q5VTH2 177 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 SLC25A29Q8N8R3 303 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 PTH2Q96A98 100 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 SGK494Q96LW2 274 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 PRADC1Q9BSG0 188 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 TMEM167BQ9NRX6 74 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 TNFSF18Q9UNG2 199 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 PSG8Q9UQ74 426 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 ALG5Q9Y673 324 aa4.86□□□□□ -1.63
USP54-208ENST00000461520 TRAV8-6A0A0B4J262 113 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 IBA57-AS1B1ANH7 110 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 MGST1P10620 155 aaKnown RBP4.85□□□□□ -1.63
USP54-208ENST00000461520 ATP6V0CP27449 155 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 GCHFRP30047 84 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 FUSP35637 526 aaKnown RBP eCLIP4.85□□□□□ -1.63
USP54-208ENST00000461520 RHOHQ15669 191 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 SMUG1Q53HV7 270 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 SAPCD1Q5SSQ6 148 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 DPPA3Q6W0C5 159 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 CYB561D1Q8N8Q1 229 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 TMEM75Q8N9X5 138 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 C9orf85Q96MD7 179 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 ACTR3CQ9C0K3 210 aaPredicted RBP4.85□□□□□ -1.63
USP54-208ENST00000461520 EPDR1Q9UM22 224 aa4.85□□□□□ -1.63
USP54-208ENST00000461520 FLG2Q5D862 2391 aaPredicted RBP4.84□□□□□ -1.63
USP54-208ENST00000461520 VPS13BQ7Z7G8 4022 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 A0A1W2PRE2 83 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 LRCOL1A6NCL2 159 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 PGPEP1LA6NFU8 196 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 GGTLC3B5MD39 225 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 PSCAO43653 123 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 PTTG1O95997 202 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 RNASE3P12724 160 aaKnown RBP4.84□□□□□ -1.63
USP54-208ENST00000461520 KRTAP10-1P60331 282 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 OR10J3Q5JRS4 329 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 ZNF506Q5JVG8 444 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 LELP1Q5T871 98 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 PRNTQ86SH4 94 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 INO80EQ8NBZ0 244 aaPredicted RBP4.84□□□□□ -1.63
USP54-208ENST00000461520 GTSF1LQ9H1H1 148 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 MED28Q9H204 178 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 SH3BGRL3Q9H299 93 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 UBR4Q5T4S7 5183 aa4.84□□□□□ -1.63
USP54-208ENST00000461520 IGHV3-73A0A0B4J1V6 119 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 A8MWV9 139 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 GIPP09681 153 aaPredicted RBP4.83□□□□□ -1.64
USP54-208ENST00000461520 S100A4P26447 101 aaKnown RBP4.83□□□□□ -1.64
USP54-208ENST00000461520 SEC61BP60468 96 aaKnown RBP4.83□□□□□ -1.64
USP54-208ENST00000461520 LAGE3Q14657 143 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 Q5VSD8 79 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 ZFP2Q6ZN57 461 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 ATP6V0E2Q8NHE4 81 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 FRZBQ92765 325 aa4.83□□□□□ -1.64
USP54-208ENST00000461520 NKX6-2Q9C056 277 aaPredicted RBP4.83□□□□□ -1.64
USP54-208ENST00000461520 BORCS7-ASMTA0A0B4J1R7 106 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 IGKV3D-20A0A0C4DH25 116 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 CTXND1A0A1B0GTU2 59 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 RNF222A6NCQ9 220 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 FABP5P3A8MUU1 101 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 ASIPP42127 132 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 Q5BKY6 102 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 RPL7L1Q6DKI1 246 aaKnown RBP4.82□□□□□ -1.64
USP54-208ENST00000461520 Q8N814 137 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 LINC00479Q96M42 142 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 TMEM70Q9BUB7 260 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 PARLQ9H300 379 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 ARL2-SNX15V9GYD0 113 aa4.82□□□□□ -1.64
USP54-208ENST00000461520 TRAV34A0A0B4J273 112 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IFNA7P01567 189 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IGHV3-30P01768 117 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IGHV3-33P01772 117 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IGHV3-30-3P0DP02 117 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 IGHV3-30-5P0DP03 117 aa4.81□□□□□ -1.64
USP54-208ENST00000461520 FGF8P55075 233 aaPredicted RBP4.81□□□□□ -1.64
USP54-208ENST00000461520 ZNF726P1Q15940 193 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms