RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 RPL36ALQ969Q0 106 aaKnown RBP8.74□□□□□ -1.01
HMGB3-204ENST00000448905 HIST1H2BAQ96A08 127 aa8.74□□□□□ -1.01
HMGB3-204ENST00000448905 UBE2WQ96B02 151 aa8.74□□□□□ -1.01
HMGB3-204ENST00000448905 AQP10Q96PS8 301 aa8.74□□□□□ -1.01
HMGB3-204ENST00000448905 JPT2Q9H910 190 aa8.74□□□□□ -1.01
HMGB3-204ENST00000448905 TRBV10-1A0A0K0K1A3 114 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 OXTP01178 125 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 TPT1P13693 172 aaKnown RBP8.73□□□□□ -1.01
HMGB3-204ENST00000448905 LINC01620Q4KN68 170 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 DNLZQ5SXM8 178 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 UFSP1Q6NVU6 142 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 SCXQ7RTU7 201 aa8.73□□□□□ -1.01
HMGB3-204ENST00000448905 KRBOX1C9JBD0 128 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 H3BVH4 76 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 PEX7O00628 323 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 FAM162BQ5T6X4 162 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 SFRP2Q96HF1 295 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 Q9UF83 564 aa8.72□□□□□ -1.01
HMGB3-204ENST00000448905 TRBV7-3A0A075B6L6 115 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 A0A087WWL8 130 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 GRIFINA4D1Z8 144 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 A6NHS1 94 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 M0R036 132 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 M0R381 172 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 UBE2G2P60604 165 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 UBE2G1P62253 170 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 ZFP82Q8N141 532 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 C1orf43Q9BWL3 253 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 MED28Q9H204 178 aa8.71□□□□□ -1.02
HMGB3-204ENST00000448905 CTXND1A0A1B0GTU2 59 aa8.7□□□□□ -1.02
HMGB3-204ENST00000448905 PKIAP61925 76 aa8.7□□□□□ -1.02
HMGB3-204ENST00000448905 CIRBP-AS1Q8TBR5 109 aa8.7□□□□□ -1.02
HMGB3-204ENST00000448905 FMC1Q96HJ9 113 aa8.7□□□□□ -1.02
HMGB3-204ENST00000448905 DNAH8Q96JB1 4490 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 SH2D1AO60880 128 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 IGLV2-8P01709 118 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 CRPP02741 224 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 CRIP1P50238 77 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 AKR1C8PQ5T2L2 129 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 ATRAIDQ6UW56 229 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 COX8CQ7Z4L0 72 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 Q86TA4 180 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 ZC2HC1AQ96GY0 325 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 ALG5Q9Y673 324 aa8.69□□□□□ -1.02
HMGB3-204ENST00000448905 FAM74A7A6NL05 159 aa8.68□□□□□ -1.02
HMGB3-204ENST00000448905 UBE2D3P61077 147 aa8.68□□□□□ -1.02
HMGB3-204ENST00000448905 UBE2D2P62837 147 aa8.68□□□□□ -1.02
HMGB3-204ENST00000448905 STOML3Q8TAV4 291 aa8.68□□□□□ -1.02
HMGB3-204ENST00000448905 TCEAL7Q9BRU2 100 aa8.68□□□□□ -1.02
HMGB3-204ENST00000448905 TMSB15BA0A087X1C1 80 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 TRBV6-8A0A0A6YYG3 113 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 RAB4BP61018 213 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 ZNF674Q2M3X9 581 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 TMEM97Q5BJF2 176 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 RPL7L1Q6DKI1 246 aaKnown RBP8.67□□□□□ -1.02
HMGB3-204ENST00000448905 DGAT2L7PQ6IED9 249 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 DNAJC30Q96LL9 226 aa8.67□□□□□ -1.02
HMGB3-204ENST00000448905 TRBV6-1A0A0K0K1D8 114 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 ANGP03950 147 aaKnown RBP8.66□□□□□ -1.02
HMGB3-204ENST00000448905 S100A9P06702 114 aaKnown RBP8.66□□□□□ -1.02
HMGB3-204ENST00000448905 FHITP49789 147 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 ZNF726P1Q15940 193 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 LINC01559Q495D7 138 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 CST9LP1Q5W188 147 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 C15orf54Q8N8G6 183 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 OR10G8Q8NGN5 311 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 CHCHD5Q9BSY4 110 aa8.66□□□□□ -1.02
HMGB3-204ENST00000448905 GIPP09681 153 aaPredicted RBP8.65□□□□□ -1.02
HMGB3-204ENST00000448905 MIAQ16674 131 aa8.65□□□□□ -1.02
HMGB3-204ENST00000448905 ENHOQ6UWT2 76 aa8.65□□□□□ -1.02
HMGB3-204ENST00000448905 ZNF471Q9BX82 626 aaPredicted RBP8.65□□□□□ -1.02
HMGB3-204ENST00000448905 FXYD6-FXYD2A0A087WZ82 144 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 F5H697 171 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 LTAP01374 205 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 RPL37AP61513 92 aaKnown RBP8.64□□□□□ -1.03
HMGB3-204ENST00000448905 ZNF56Q15929 161 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 Q5BKY6 102 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 PLA2G2DQ9UNK4 145 aa8.64□□□□□ -1.03
HMGB3-204ENST00000448905 MAP1LC3B2A6NCE7 125 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 USP17L23D6RBM5 183 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 PTTG1O95997 202 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 SMIM17P0DL12 118 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 SPANXN1Q5VSR9 72 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 DPH3Q96FX2 82 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 MAP1LC3BQ9GZQ8 125 aa8.63□□□□□ -1.03
HMGB3-204ENST00000448905 AKR1C3P42330 323 aa8.62□□□□□ -1.03
HMGB3-204ENST00000448905 KRTAP10-4P60372 401 aaPredicted RBP8.62□□□□□ -1.03
HMGB3-204ENST00000448905 CLRN3Q8NCR9 226 aa8.62□□□□□ -1.03
HMGB3-204ENST00000448905 LRP1Q07954 4544 aaKnown RBP8.62□□□□□ -1.03
HMGB3-204ENST00000448905 A0A0D9SG52 128 aa8.61□□□□□ -1.03
HMGB3-204ENST00000448905 HLA-DQA1P01909 254 aa8.61□□□□□ -1.03
HMGB3-204ENST00000448905 MPV17L2Q567V2 206 aa8.61□□□□□ -1.03
HMGB3-204ENST00000448905 C9orf163Q8N9P6 203 aa8.61□□□□□ -1.03
HMGB3-204ENST00000448905 NEXN-AS1Q8NBZ9 246 aa8.61□□□□□ -1.03
HMGB3-204ENST00000448905 CXCL1P09341 107 aa8.6□□□□□ -1.03
HMGB3-204ENST00000448905 RPL19P84098 196 aaKnown RBP8.6□□□□□ -1.03
HMGB3-204ENST00000448905 PRR27Q6MZM9 219 aa8.6□□□□□ -1.03
HMGB3-204ENST00000448905 BAGE2Q86Y30 109 aa8.6□□□□□ -1.03
HMGB3-204ENST00000448905 DERL1Q9BUN8 251 aa8.6□□□□□ -1.03
HMGB3-204ENST00000448905 UBR4Q5T4S7 5183 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms