RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 FAM231BA6NCW3 169 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 F5H768 121 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 RS1O15537 224 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 NXPH4O95158 308 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 FOXA3P55318 350 aaPredicted RBP12.15□□□□□ -0.46
LIME1-202ENST00000444951 FAM74A4Q5TZK3 123 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 CFAP126Q5VTH2 177 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 POM121L12Q8N7R1 296 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 SAMD10Q9BYL1 202 aa12.15□□□□□ -0.46
LIME1-202ENST00000444951 DEFB131BA0A096LNP1 70 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 TRAV10A0A0B4J240 114 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 TRAV4A0A0B4J268 109 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 A0A1B0GUT8 65 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 A8MWV9 139 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 ATRAIDQ6UW56 229 aa12.14□□□□□ -0.47
LIME1-202ENST00000444951 PHLDA1Q8WV24 401 aaPredicted RBP12.14□□□□□ -0.47
LIME1-202ENST00000444951 TRGV4A0A0C4DH28 118 aa12.13□□□□□ -0.47
LIME1-202ENST00000444951 LY6G6CO95867 125 aa12.13□□□□□ -0.47
LIME1-202ENST00000444951 HOXA5P20719 270 aa12.13□□□□□ -0.47
LIME1-202ENST00000444951 MRPL54Q6P161 138 aaKnown RBP12.13□□□□□ -0.47
LIME1-202ENST00000444951 C14orf178Q8N769 122 aaPredicted RBP12.13□□□□□ -0.47
LIME1-202ENST00000444951 AP1S3Q96PC3 154 aa12.13□□□□□ -0.47
LIME1-202ENST00000444951 URGCP-MRPS24S4R325 110 aa12.13□□□□□ -0.47
LIME1-202ENST00000444951 A0A087WWC5 75 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 SMIM17P0DL12 118 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 RIGQ13278 110 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 PIK3CD-AS1Q5SR53 167 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 WDR73Q6P4I2 378 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 NDUFAF3Q9BU61 184 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 HERC2O95714 4834 aa12.12□□□□□ -0.47
LIME1-202ENST00000444951 IGHV4-4A0A075B6R2 117 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 MGPP08493 103 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 TRGC1P0CF51 173 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 EVI2AP22794 236 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 KCNIP4Q6PIL6 250 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 CEMP1Q6PRD7 247 aaPredicted RBP12.11□□□□□ -0.47
LIME1-202ENST00000444951 C18orf15Q96N68 181 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 CNFNQ9BYD5 112 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 HECTD4Q9Y4D8 3996 aa12.11□□□□□ -0.47
LIME1-202ENST00000444951 A0A0J9YY99 117 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 F5H697 171 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 CRYGDP07320 174 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 S100PP25815 95 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 CAMPP49913 170 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 FHL2Q14192 279 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 ZNF56Q15929 161 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 SMIM15Q7Z3B0 74 aa12.1□□□□□ -0.47
LIME1-202ENST00000444951 NUPR2A6NF83 97 aa12.09□□□□□ -0.47
LIME1-202ENST00000444951 ATP6V1G1O75348 118 aa12.09□□□□□ -0.47
LIME1-202ENST00000444951 IMMP2LQ96T52 175 aa12.09□□□□□ -0.47
LIME1-202ENST00000444951 TMEM242Q9NWH2 141 aa12.09□□□□□ -0.47
LIME1-202ENST00000444951 TRAV26-1A0A087WT03 109 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 IGLL5B9A064 214 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 RHODO00212 210 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 TMEM88Q6PEY1 159 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 Q6ZSN1 163 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 HHLA3Q9XRX5 114 aa12.08□□□□□ -0.48
LIME1-202ENST00000444951 UFSP1Q6NVU6 142 aa12.07□□□□□ -0.48
LIME1-202ENST00000444951 ZFP2Q6ZN57 461 aa12.07□□□□□ -0.48
LIME1-202ENST00000444951 BTF3L4Q96K17 158 aa12.07□□□□□ -0.48
LIME1-202ENST00000444951 DPH3P1Q9H4G8 78 aa12.07□□□□□ -0.48
LIME1-202ENST00000444951 KIF25-AS1Q9Y6Z4 181 aa12.07□□□□□ -0.48
LIME1-202ENST00000444951 NACAE9PAV3 2078 aa12.06□□□□□ -0.48
LIME1-202ENST00000444951 PAX4O43316 350 aa12.06□□□□□ -0.48
LIME1-202ENST00000444951 GATA1P15976 413 aaPredicted RBP12.06□□□□□ -0.48
LIME1-202ENST00000444951 HBBP68871 147 aa12.06□□□□□ -0.48
LIME1-202ENST00000444951 CIDEAO60543 219 aa12.05□□□□□ -0.48
LIME1-202ENST00000444951 RAB4BP61018 213 aa12.05□□□□□ -0.48
LIME1-202ENST00000444951 CBLN2Q8IUK8 224 aa12.05□□□□□ -0.48
LIME1-202ENST00000444951 PRO0255Q9UI72 69 aa12.05□□□□□ -0.48
LIME1-202ENST00000444951 A0A1B0GW15 77 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 A0A1B0GXF2 115 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 CRYBA4P53673 196 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 LINC00315P59091 139 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 ATP5L2Q7Z4Y8 100 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 SLC25A29Q8N8R3 303 aa12.04□□□□□ -0.48
LIME1-202ENST00000444951 KLK5Q9Y337 293 aaPredicted RBP12.04□□□□□ -0.48
LIME1-202ENST00000444951 LOC100131303A0A0U1RQF7 123 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 NUDT3O95989 172 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 S100A8P05109 93 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 P0DMU3 169 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 FAM231AP0DMU4 169 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 FAM231CP0DMU5 169 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 SLAQ13239 276 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 AMN1Q8IY45 258 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 VSIG2Q96IQ7 327 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 TMEM191AQ9H0A3 160 aa12.03□□□□□ -0.48
LIME1-202ENST00000444951 TRAV9-1A0A075B6T8 112 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 TGIF2-C20orf24A0A0A6YYL0 155 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 TRAV26-2A0A0B4J265 109 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 K7EQD1 137 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 SCO1O75880 301 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 GYPEP15421 78 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 S100A1P23297 94 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 SUMO4Q6EEV6 95 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 PRADC1Q9BSG0 188 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 SMCO4Q9NRQ5 59 aa12.02□□□□□ -0.49
LIME1-202ENST00000444951 TRBV6-4A0A1B0GX49 114 aa12.01□□□□□ -0.49
LIME1-202ENST00000444951 ELOBQ15370 118 aa12.01□□□□□ -0.49
LIME1-202ENST00000444951 RHOHQ15669 191 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 111.2 ms