RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RHODO00212 210 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 CRYGDP07320 174 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 SMIM17P0DL12 118 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 S100PP25815 95 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 SMIM15Q7Z3B0 74 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 MUC7Q8TAX7 377 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 SAMD10Q9BYL1 202 aa11.13□□□□□ -0.63
USP40-206ENST00000443711 A0A087WWL8 130 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 A0A1B0GW15 77 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 HOXA5P20719 270 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 SLAQ13239 276 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 FHL2Q14192 279 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 FAM74A4Q5TZK3 123 aa11.12□□□□□ -0.63
USP40-206ENST00000443711 C14orf178Q8N769 122 aaPredicted RBP11.12□□□□□ -0.63
USP40-206ENST00000443711 IGHV3-73A0A0B4J1V6 119 aa11.11□□□□□ -0.63
USP40-206ENST00000443711 UFSP1Q6NVU6 142 aa11.11□□□□□ -0.63
USP40-206ENST00000443711 CEMP1Q6PRD7 247 aaPredicted RBP11.11□□□□□ -0.63
USP40-206ENST00000443711 BTF3L4Q96K17 158 aa11.11□□□□□ -0.63
USP40-206ENST00000443711 KIF25-AS1Q9Y6Z4 181 aa11.11□□□□□ -0.63
USP40-206ENST00000443711 TRAV9-1A0A075B6T8 112 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 NUPR2A6NF83 97 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 S100A8P05109 93 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 EVI2AP22794 236 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 MRPL54Q6P161 138 aaKnown RBP11.1□□□□□ -0.63
USP40-206ENST00000443711 ATRAIDQ6UW56 229 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 ATP5L2Q7Z4Y8 100 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 FAM210BQ96KR6 192 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 DPH3P1Q9H4G8 78 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 PRO0255Q9UI72 69 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 HHLA3Q9XRX5 114 aa11.1□□□□□ -0.63
USP40-206ENST00000443711 KLK5Q9Y337 293 aaPredicted RBP11.1□□□□□ -0.63
USP40-206ENST00000443711 GATA1P15976 413 aaPredicted RBP11.09□□□□□ -0.63
USP40-206ENST00000443711 A0A1B0GXF2 115 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 F5H697 171 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 PAX4O43316 350 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 CAMPP49913 170 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 CRYBA4P53673 196 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 RAB4BP61018 213 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 HBBP68871 147 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 ZNF56Q15929 161 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 ZFAND6Q6FIF0 208 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 TMEM191AQ9H0A3 160 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 URGCP-MRPS24S4R325 110 aa11.08□□□□□ -0.64
USP40-206ENST00000443711 TRAV26-1A0A087WT03 109 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 TRBV6-4A0A1B0GX49 114 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 C3orf84H3BNL1 204 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 MGPP08493 103 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 S100A1P23297 94 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 LINC00315P59091 139 aa11.07□□□□□ -0.64
USP40-206ENST00000443711 A0A0J9YY99 117 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 IGLL5B9A064 214 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 H3BNG1 76 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 ATP6V1G1O75348 118 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 TMEM88Q6PEY1 159 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 Q6ZSN1 163 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 SLC25A29Q8N8R3 303 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 PRADC1Q9BSG0 188 aa11.06□□□□□ -0.64
USP40-206ENST00000443711 RHOHQ15669 191 aa11.05□□□□□ -0.64
USP40-206ENST00000443711 RASL11AQ6T310 242 aa11.05□□□□□ -0.64
USP40-206ENST00000443711 VSIG2Q96IQ7 327 aa11.05□□□□□ -0.64
USP40-206ENST00000443711 SMCO4Q9NRQ5 59 aa11.05□□□□□ -0.64
USP40-206ENST00000443711 H7C1H1 209 aa11.04□□□□□ -0.64
USP40-206ENST00000443711 K7EQD1 137 aa11.04□□□□□ -0.64
USP40-206ENST00000443711 C15orf53Q8NAA6 179 aa11.04□□□□□ -0.64
USP40-206ENST00000443711 GATD1Q8NB37 220 aa11.04□□□□□ -0.64
USP40-206ENST00000443711 DNAH7Q8WXX0 4024 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 TCTAP57738 103 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 ELOBQ15370 118 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 FAM104BQ5XKR9 115 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 SUMO4Q6EEV6 95 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 AMN1Q8IY45 258 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 FRZBQ92765 325 aa11.03□□□□□ -0.64
USP40-206ENST00000443711 GYPEP15421 78 aa11.02□□□□□ -0.65
USP40-206ENST00000443711 RAB4AP20338 218 aa11.02□□□□□ -0.65
USP40-206ENST00000443711 COX19Q49B96 90 aa11.02□□□□□ -0.65
USP40-206ENST00000443711 RNF185Q96GF1 192 aa11.02□□□□□ -0.65
USP40-206ENST00000443711 ICOSQ9Y6W8 199 aa11.02□□□□□ -0.65
USP40-206ENST00000443711 TRBV24-1A0A075B6N3 115 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 TRBV10-1A0A0K0K1A3 114 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 NUDT3O95989 172 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 MRPL23Q16540 153 aaKnown RBP11.01□□□□□ -0.65
USP40-206ENST00000443711 CASC10Q5T4H9 136 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 CBLN2Q8IUK8 224 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 MRAP2Q96G30 205 aa11.01□□□□□ -0.65
USP40-206ENST00000443711 TGIF2-C20orf24A0A0A6YYL0 155 aa11□□□□□ -0.65
USP40-206ENST00000443711 LOC100131303A0A0U1RQF7 123 aa11□□□□□ -0.65
USP40-206ENST00000443711 M0QY20 66 aa11□□□□□ -0.65
USP40-206ENST00000443711 P0DMU3 169 aa11□□□□□ -0.65
USP40-206ENST00000443711 FAM231AP0DMU4 169 aa11□□□□□ -0.65
USP40-206ENST00000443711 FAM231CP0DMU5 169 aa11□□□□□ -0.65
USP40-206ENST00000443711 TMEM136Q6ZRR5 245 aa11□□□□□ -0.65
USP40-206ENST00000443711 APLNQ9ULZ1 77 aa11□□□□□ -0.65
USP40-206ENST00000443711 TRAV26-2A0A0B4J265 109 aa10.99□□□□□ -0.65
USP40-206ENST00000443711 RPL36AP83881 106 aaKnown RBP10.99□□□□□ -0.65
USP40-206ENST00000443711 MRPL51Q4U2R6 128 aaKnown RBP10.99□□□□□ -0.65
USP40-206ENST00000443711 SH2D6Q7Z4S9 175 aa10.99□□□□□ -0.65
USP40-206ENST00000443711 RPL36ALQ969Q0 106 aaKnown RBP10.99□□□□□ -0.65
USP40-206ENST00000443711 DNAJC30Q96LL9 226 aa10.99□□□□□ -0.65
USP40-206ENST00000443711 YPEL4Q96NS1 127 aa10.99□□□□□ -0.65
USP40-206ENST00000443711 GNB1LQ9BYB4 327 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms