RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TIRAPP58753 221 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 UNQ9165/PRO28630Q6UXU0 137 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 FAM167A-AS1Q96KT0 104 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 HHLA3Q9XRX5 114 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 IFITM1P13164 125 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 MUSTN1Q8IVN3 82 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 NUP210Q8TEM1 1887 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-209ENST00000438120 ZNF503Q96F45 646 aa13.23□□□□□ -0.29
PTPRF-209ENST00000438120 TTTY13Q9BZ97 58 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 TIMM17AQ99595 171 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 IGLV2-14P01704 120 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 ANKRD29Q8N6D5 301 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 IGLV1-47P01700 117 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 SND1-IT1Q9HBX3 110 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 HERV-K104P63124 156 aa13.22□□□□□ -0.29
PTPRF-209ENST00000438120 DAZ2Q13117 558 aaKnown RBP13.22□□□□□ -0.29
PTPRF-209ENST00000438120 DAZ4Q86SG3 579 aaKnown RBP13.22□□□□□ -0.29
PTPRF-209ENST00000438120 DAZ3Q9NR90 486 aaKnown RBP13.22□□□□□ -0.29
PTPRF-209ENST00000438120 KIF26AQ9ULI4 1882 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-209ENST00000438120 GAGE12HA6NDE8 117 aa13.21□□□□□ -0.29
PTPRF-209ENST00000438120 NCKAP5O14513 1909 aa13.21□□□□□ -0.29
PTPRF-209ENST00000438120 NCR3O14931 201 aa13.21□□□□□ -0.29
PTPRF-209ENST00000438120 TRACP01848 142 aa13.21□□□□□ -0.29
PTPRF-209ENST00000438120 ANKRD39Q53RE8 183 aa13.21□□□□□ -0.29
PTPRF-209ENST00000438120 DAZAP2Q15038 168 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-209ENST00000438120 RNF152Q8N8N0 203 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 Q8NA96 180 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 COX7B2Q8TF08 81 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 Q6ZSR3 168 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 ATRXP46100 2492 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 TDRG1Q3Y452 100 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 SPRY4Q9C004 299 aa13.2□□□□□ -0.3
PTPRF-209ENST00000438120 SIRPDQ9H106 197 aa13.19□□□□□ -0.3
PTPRF-209ENST00000438120 LYPD6Q86Y78 171 aa13.19□□□□□ -0.3
PTPRF-209ENST00000438120 MDFICQ9P1T7 246 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 TRBV7-3A0A075B6L6 115 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 A4D1N5 150 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 PLA2G5P39877 138 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 C9orf47Q6ZRZ4 202 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 WFDC11Q8NEX6 87 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 PRB2P02812 416 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-209ENST00000438120 FRMD6-AS1P0C7T7 363 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 C4orf3Q8WVX3 66 aa13.18□□□□□ -0.3
PTPRF-209ENST00000438120 SH2D6Q7Z4S9 175 aa13.17□□□□□ -0.3
PTPRF-209ENST00000438120 IGHG2P01859 326 aa13.17□□□□□ -0.3
PTPRF-209ENST00000438120 TMEM61Q8N0U2 210 aa13.17□□□□□ -0.3
PTPRF-209ENST00000438120 LINC01548A6NM66 108 aa13.17□□□□□ -0.3
PTPRF-209ENST00000438120 VSIG2Q96IQ7 327 aa13.17□□□□□ -0.3
PTPRF-209ENST00000438120 PRSS47A8MTI9 375 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 KLK12Q9UKR0 248 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 GPHB5Q86YW7 130 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 TNCP24821 2201 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 DEFB125Q8N687 156 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 TEX48A0A1B0GUV7 120 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 C19orf84I3L1E1 186 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 BAALCQ8WXS3 180 aa13.16□□□□□ -0.3
PTPRF-209ENST00000438120 CLPSL1A2RUU4 121 aa13.15□□□□□ -0.3
PTPRF-209ENST00000438120 K7EMT4 169 aa13.15□□□□□ -0.3
PTPRF-209ENST00000438120 MYCNOSP40205 109 aa13.15□□□□□ -0.3
PTPRF-209ENST00000438120 OPRPNQ99935 248 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-209ENST00000438120 DNAJC9-AS1A6NH13 148 aa13.15□□□□□ -0.3
PTPRF-209ENST00000438120 IGLL5B9A064 214 aa13.15□□□□□ -0.3
PTPRF-209ENST00000438120 ADAMTS9Q9P2N4 1935 aa13.14□□□□□ -0.31
PTPRF-209ENST00000438120 TTC28Q96AY4 2481 aa13.14□□□□□ -0.31
PTPRF-209ENST00000438120 FANCD2OSQ96PS1 177 aa13.14□□□□□ -0.31
PTPRF-209ENST00000438120 CEMP1Q6PRD7 247 aaPredicted RBP13.13□□□□□ -0.31
PTPRF-209ENST00000438120 NOTCH2Q04721 2471 aa13.13□□□□□ -0.31
PTPRF-209ENST00000438120 SMAD5-AS1Q9Y6J3 95 aa13.13□□□□□ -0.31
PTPRF-209ENST00000438120 CHD3Q12873 2000 aaKnown RBP13.13□□□□□ -0.31
PTPRF-209ENST00000438120 LINC01545Q5VT33 79 aa13.13□□□□□ -0.31
PTPRF-209ENST00000438120 FUSP35637 526 aaKnown RBP eCLIP13.12□□□□□ -0.313e-9■■■■■ 29.2
PTPRF-209ENST00000438120 A6NDX4 124 aa13.12□□□□□ -0.31
PTPRF-209ENST00000438120 NDUFA1O15239 70 aa13.12□□□□□ -0.31
PTPRF-209ENST00000438120 UBE2AP49459 152 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 PLXNB3Q9ULL4 1909 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 TOMM6Q96B49 74 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 FXYD2P54710 66 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 TP53TG3Q9ULZ0 132 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 SPG11Q96JI7 2443 aa13.11□□□□□ -0.31
PTPRF-209ENST00000438120 IGKV3D-7A0A0C4DH55 119 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 P0DMU3 169 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 FAM231AP0DMU4 169 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 FAM231CP0DMU5 169 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 HIST2H2BDQ6DRA6 164 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 MAP6D1Q9H9H5 199 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 CCDC140Q96MF4 163 aa13.1□□□□□ -0.31
PTPRF-209ENST00000438120 A0A0J9YX75 114 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 SPAG11BQ08648 103 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 C22orf34Q6ZV56 151 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 KIR2DL5BA0A0G2JN68 375 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 KIR2DL5BA0A0G2JPC4 375 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 C11orf86A6NJI1 115 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 KIR2DL5AQ8N109 375 aa13.09□□□□□ -0.31
PTPRF-209ENST00000438120 RBM3P98179 157 aaKnown RBP13.08□□□□□ -0.32
PTPRF-209ENST00000438120 TECTAO75443 2155 aa13.08□□□□□ -0.32
PTPRF-209ENST00000438120 CLEC2BQ92478 149 aa13.08□□□□□ -0.32
PTPRF-209ENST00000438120 IGKV1D-37A0A075B6S9 117 aa13.07□□□□□ -0.32
PTPRF-209ENST00000438120 CTRLP40313 264 aa13.07□□□□□ -0.32
PTPRF-209ENST00000438120 LMO4P61968 165 aa13.07□□□□□ -0.32
PTPRF-209ENST00000438120 LECT2O14960 151 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms